SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18344

Length: 2078 nt

UniGene Fasta

>sp_v3.0_unigene18344
ATGGGGAAAGAACGAATAATTGGACTGTTTGCACACTTTAAAAAGGCTCCGCCCTTCCTTCTCTCGCCATAATGGGCGGCGGCTCTTGCCTCTGTATGCGTTTACATTTCCAACATTTCTGGGAGGTTCTTATTATTTATTTAAATAATAGAGCCCGTTGATTTTCCTCTATATCCCTTTCTCAGTTGAACATTGTCGTCTGAAGGTGGGCGGCCATGGCGAGTTTGTTAGCAGCAGCCAGGCTTGGCAGGACCGCGAGGTTGAAGAACCCGCTCTCGGCCCATCTTTCTCGATCAAGTATATTGTCAGCACTTCTAGTTGGAGGACATGAGCATGTTCAAAATCTTTCTTCTCATGTAGCACTGGATGCTCCAGCTGGTAGAAAAGATCTGAGGGTACGCTATATTGGCCTTTACAAAGATTCTCCCTATCAAGCATGGACTAGGTCATTTGCATCGGATACCAGTAAACTTGTTGAGGCTCTGGTGCCATTCATGGGTGAATCGATTTCTGATGGGACTCTTTCAACTTTTCTCAAGAAACCAGGAGATAGAGTTGAGGTTGATGAGCCCATAGCTCAAGTTGAGACGGACAAGGTAACTGTTGATGTTAATAGCCCTGAAGCTGGTTTCATTGAAAAGTTTGTAGCTAAGGAAGGAGATACTGTTGTACCTGGAGCAAAGATAGCTATTATTTCAAAGTCCACGGATGGAGCAAAACCTGAAGTTTCAGAGAAAGACAAGCAAGCACCTCAACCTTCTCAACCATCAGTTACTGCAGATAAGAAGGAAGAAAAAAAAGCTAAGACATTACCATCTACAGGGCCTGTGGAGGCAGTTGCAAAAGACAAAGTGGCCACTCCTTCCACCCCTGTGTCTCCTAAAGCTTCTCCTTCTCCTTCTGAACCTCAGCTTCCTCCGAAGGAAAGGGAAAGAAGGGTTCCCATGACAAGACTACGAAAGCGAGTGGCTACACGTCTGAAAGACTCACAGAACACATTTGCTTTGCTAACTACATTTAATGAAGTTGACATGACAAATTTGATGCAACTTCGTTCTGAGTATAAAGATGCCTTCCTTGAAAAGCATGGTGTCAAGCTGGGTTTCATGTCAGGATTTGTAAAGGGTGCAGTGAGTGCACTTCAGAGTCAACCTACAGTGAATGCTGTCATTGATGGTGATGATATTATATACAGAGATTATGTTGACATCAGCATTGCTGTCGGTACACCAAAGGGGCTTGTTGTACCGGTGATCCGTAATGCAGATCGTTTGAACTTTGCAGAAATAGAGAAAACAATAAGTGTGCTCGGAAAGAAAGCAAATAATGGCACAATATCTATTGATGAAATGGCTGGAGGCACTTTCACCATATCAAATGGTGGTGTGTATGGCAGCCTCTTGAGCACCCCCATCATCAACCCTCCACAGTCTGCCATTTTGGGAATGCATTCCATCCAAAATCGCCCCATGGTTGTTGGTGGAAATATTGTTGCAAGACCTATGATGTACATTGCTCTTACTTATGATCATCGACTCATTGATGGAAGAGAGGCTGTTTACTTCCTTCGACGTGTCAAGGATATAATTGAGGATCCACGGAGGCTTCTGCTTGATATCTAAAATGATTGCAAACTCTGTCCAGAGGGAGCTGAGATGTTATCAAAGACATGAAAAATGAAGATTTTTGGCTGAATAATATTTAGGCCAGTTTCTTTTGATCTACATGCGTTCTGCACCATATTTTTTATGACATTCGGTTGTTTAAGTGTTAGTTATGAAGAGTCTGCGGTGACGCGGATATTATTATGTTTGCTATCACCGTAATTTACCGATCTTAGCACATTTGGGTACTCGGAGAAGTTCACACCACCGTTTGGACATTTTTCTACTTAGAACTTTATTCACTTGTCACAGAGAGAGGACTGCACTCCTTCCAAATATTGGGAAGATCTTTTTGTTTTTTTTTCAAATAGAGATCGGTTGAAAAGGTATTGAAATTTAGCTTTGAGATAGATAGCCTGTAATAAATACACGAAATAAAAGCAATTTCTTTCTTCAGGCTATGAAATGTAGCCC

Ace file of the UniGene sp_v3.0_unigene18344

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Arabidopsis thaliana] sp\|Q9FLQ4.1\|ODO2A_ARATH RecName: Full=Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase comp	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrolipoyllysine-residue succinyltransferase.	EC:2.3.1.61	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Lysine degradation	00310	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	RCOM_1303600;

Source	InterPros	Term	Type	Identity
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	2-oxoacid dehydrogenase acyltransferase, catalytic domain	IPR001078	-	-
Sma3	Biotin/lipoyl attachment	IPR000089	-	-
Sma3	Dihydrolipoamide succinyltransferase	IPR006255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G55070.1	Dihydrolipoamide succinyltransferase chr5:22347637-22350409 FORWARD LENGTH=464	69%
RefSeq	Arabidopsis thaliana	NP_200318.1	dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1 [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002317337.1	predicted protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ACY2

Fln msg:

Fln protein: MASLLAAARLGRTARLKNPLSAHLSRSSILSALLVGGHEHVQNLSSHVALDAPAGRKDLRVRYIGLYKDSPYQAWTRSFASDTSKLVEALVPFMGESISDGTLSTFLKKPGDRVEVDEPIAQVETDKVTVDVNSPEAGFIEKFVAKEGDTVVPGAKIAIISKSTDGAKPEVSEKDKQAPQPSQPSVTADKKEEKKAKTLPSTGPVEAVAKDKVATPSTPVSPKASPSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQSQPTVNAVIDGDDIIYRDYVDISIAVGTPKGLVVPVIRNADRLNFAEIEKTISVLGKKANNGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIIEDPRRLLLDI*

Protein Length: 470

Fln nts: ATGGGGAAAGAACGAATAATTGGACTGTTTGCACACTTTAAAAAGGCTCCGCCCTTCCTTCTCTCGCCATAATGGGCGGCGGCTCTTGCCTCTGTATGCGTTTACATTTCCAACATTTCTGGGAGGTTCTTATTATTTATTTAAATAATAGAGCCCGTTGATTTTCCTCTATATCCCTTTCTCAGTTGAACATTGTCGTCTGAAGGTGGGCGGCC_-_ATGGCGAGTTTGTTAGCAGCAGCCAGGCTTGGCAGGACCGCGAGGTTGAAGAACCCGCTCTCGGCCCATCTTTCTCGATCAAGTATATTGTCAGCACTTCTAGTTGGAGGACATGAGCATGTTCAAAATCTTTCTTCTCATGTAGCACTGGATGCTCCAGCTGGTAGAAAAGATCTGAGGGTACGCTATATTGGCCTTTACAAAGATTCTCCCTATCAAGCATGGACTAGGTCATTTGCATCGGATACCAGTAAACTTGTTGAGGCTCTGGTGCCATTCATGGGTGAATCGATTTCTGATGGGACTCTTTCAACTTTTCTCAAGAAACCAGGAGATAGAGTTGAGGTTGATGAGCCCATAGCTCAAGTTGAGACGGACAAGGTAACTGTTGATGTTAATAGCCCTGAAGCTGGTTTCATTGAAAAGTTTGTAGCTAAGGAAGGAGATACTGTTGTACCTGGAGCAAAGATAGCTATTATTTCAAAGTCCACGGATGGAGCAAAACCTGAAGTTTCAGAGAAAGACAAGCAAGCACCTCAACCTTCTCAACCATCAGTTACTGCAGATAAGAAGGAAGAAAAAAAAGCTAAGACATTACCATCTACAGGGCCTGTGGAGGCAGTTGCAAAAGACAAAGTGGCCACTCCTTCCACCCCTGTGTCTCCTAAAGCTTCTCCTTCTCCTTCTGAACCTCAGCTTCCTCCGAAGGAAAGGGAAAGAAGGGTTCCCATGACAAGACTACGAAAGCGAGTGGCTACACGTCTGAAAGACTCACAGAACACATTTGCTTTGCTAACTACATTTAATGAAGTTGACATGACAAATTTGATGCAACTTCGTTCTGAGTATAAAGATGCCTTCCTTGAAAAGCATGGTGTCAAGCTGGGTTTCATGTCAGGATTTGTAAAGGGTGCAGTGAGTGCACTTCAGAGTCAACCTACAGTGAATGCTGTCATTGATGGTGATGATATTATATACAGAGATTATGTTGACATCAGCATTGCTGTCGGTACACCAAAGGGGCTTGTTGTACCGGTGATCCGTAATGCAGATCGTTTGAACTTTGCAGAAATAGAGAAAACAATAAGTGTGCTCGGAAAGAAAGCAAATAATGGCACAATATCTATTGATGAAATGGCTGGAGGCACTTTCACCATATCAAATGGTGGTGTGTATGGCAGCCTCTTGAGCACCCCCATCATCAACCCTCCACAGTCTGCCATTTTGGGAATGCATTCCATCCAAAATCGCCCCATGGTTGTTGGTGGAAATATTGTTGCAAGACCTATGATGTACATTGCTCTTACTTATGATCATCGACTCATTGATGGAAGAGAGGCTGTTTACTTCCTTCGACGTGTCAAGGATATAATTGAGGATCCACGGAGGCTTCTGCTTGATATCTAA___AATGATTGCAAACTCTGTCCAGAGGGAGCTGAGATGTTATCAAAGACATGAAAAATGAAGATTTTTGGCTGAATAATATTTAGGCCAGTTTCTTTTGATCTACATGCGTTCTGCACCATATTTTTTATGACATTCGGTTGTTTAAGTGTTAGTTATGAAGAGTCTGCGGTGACGCGGATATTATTATGTTTGCTATCACCGTAATTTACCGATCTTAGCACATTTGGGTACTCGGAGAAGTTCACACCACCGTTTGGACATTTTTCTACTTAGAACTTTATTCACTTGTCACAGAGAGAGGACTGCACTCCTTCCAAATATTGGGAAGATCTTTTTGTTTTTTTTTCAAATAGAGATCGGTTGAAAAGGTATTGAAATTTAGCTTTGAGATAGATAGCCTGTAATAAATACACGAAATAAAAGCAATTTCTTTCTTCAGGCTATGAAATGTAGCCC

Fln Alignment:

Contig18344___KNPLSAHLSRSSILSALLVGGHEHVQNLSSHVALDAPAGRKDLRVRYIGLYKDSPYQAWTRSFASDTSKLVEALVPFMGESISDGTLSTFLKKPGDRVEVDEPIAQVETDKVTVDVNSPEAGFIEKFVAKEGDTVVPGAKIAIISKSTDGAKPEVSEKDKQAPQPSQPSVXXXXXXXXXXXXLPSTGPVEAVAKDKVATPSTPVSPKASPSPSEPQLPPKERERRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQSQPTVNAVIDGDDIIYRDYVDISIAVGTPKGLVVPVIRNADRLNFAEIEKTISVLGKKANNGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIIEDPRRLLLDI
D5ACY2_______________KNPLFAHLSRSNILSAFLVGGHEHVRNLTSHVTLDASAGRKDLRVPYIGLYKDSPYQSWTRSFASDTSNLIEAVVPFMGESISDGTLATFLKKPGDRVEVDEAIAQVETDKVTVDVTSPEAGFIEKFVAKEGDTVVPGTKVAIISKSADGAKPVVAEKEKQAPQPSQPLPSADKKVAEKAKRLPSAEPVEAVAKDKVATPSTAVSPKASPSPSEPQLPPKERERRVPITRLRKRVATRLKDAQNTFALLTTFNEVDMTNLMQLRSEYKDAFLEKHGVKLGFMSGFVKGAVSALQNQPTVNAVIDGDDIIYRDYIDISIAVGTPKGLVVPVIRNADHLNFAEIEKTISVLGKKANSGTISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIQNRPMVVGGNIVARPMMYIALTYDHRLIDGREAVYFLRRVKDIVEDPRRLLLDI

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
201			8	91	0.999807
288			29	70	1.0
302	88			11	0.999952
332	11		88		0.999937
1569		94		1	0.936582
1658	4		95		0.996252
1890	54		43		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain