SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18337

Length: 1319 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18337

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Uncharacterized protein; Glycine max (Soybean) (Glycine hispida).	-	-	0.0	79%

Source	Gene names
Sma3	At1g30970; GSVIVT00030113001; GSVIVT00037541001; Os09g0560900; OsI_32390; OsJ_30337; P0635G10.9; PHYPADRAFT_61926; PHYPADRAFT_87880; POPTRDRAFT_796265; POPTRDRAFT_830715; VITISV_029271; VITISV_029539;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3		IPR002917	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	GTP-binding protein Era	IPR005662	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G30970.1	SUF4 zinc finger (C2H2 type) family protein chr1:11040613-11043593 REVERSE LENGTH=367	1.0e-26	71%
RefSeq	Arabidopsis thaliana	NP_001077634.1	C2H2-type zinc finger protein [Arabidopsis thaliana]	1.0e-26	71%
RefSeq	Populus trichocarpa	XP_002326629.1	predicted protein [Populus trichocarpa]	2.0e-29	82%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: I1KQF2

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 209 - 371

Fln protein: PRQSRTFSKNL*EPSVDYLFQLLHPLNLQCNHYIPLVLH*RHIQHHLLKHCFLLMVHIQIHQLRQIFQHYLNMACHNGQQVN*EVQGRQAQ*VHCLRI*QTSR*MLPAFPGGSASTATPSHMYALGPNTGGPSIGPPPVISNKPPAAQGFTKEVYLVWDDEAMSMEERRTSLAKYQVHDVTSQMSSVDAAIDRRILESRLAGRMGFGI*

Protein Length: 210

Fln nts: TACCTCGACAATCAAGAACCTTCTCAAAGAATTTGTAGGAGCCCTCTGTTGACTACCTATTTCAACTCCTTCATCCACTCAATCTTCAATGCAACCATTATATTCCCCTAGTGCTCCATTGACGCCATATACAGCACCATCTTCTCAAGCATTGTTTCCTATTAATGGTCCATATTCAAATACATCAGTTGCGTCAAATCTTCCAACACTATCTCAATATGGCTTGCCACAACGGCCAACAAGTGAATTGAGAAGTTCAGGGGAGACAAGCTCAGTGAGTTCATTGCCTTCGAATTTGACAAACAAGCCGCTAAATGCTACCTGCGTTTCCAGGTGGTTCTGCTTCAACTGCAACCCCATCTCACATGTATGCATTAGGACCAAATACTGGGGGCCCATCCATTGGGCCTCCCCCAGTGATATCAAATAAACCACCTGCAGCTCAGGGGTTTACTAAGGAGGTGTATTTGGTTTGGGATGATGAAGCAATGTCCATGGAAGAACGAAGGACATCCCTTGCCAAATATCAGGTGCATGACGTGACCTCACAGATGAGCTCTGTTGATGCAGCTATTGATAGAAGGATATTAGAAAGCAGGCTTGCTGGTCGTATGGGGTTTGGAATCTGA___TCAAGGATTTCATTTTGAAGGCAATAGGATCACGCAAGAAGTTTGAGCTATAGATACCTATTAGATGGAGATTCGAAGAAGGATTTGGTTGGTAGTCAACAGAGGGCTCCTACAAATTCTTTGAGAAGGTTCTTGATTGTCGAGGAAAGGGGACCTCACTCATATAGCATAGAGTTGTTCATGAAGGCAAGGTGGTGGTGGTCCCAAATATATTTTTCCTATAAATTGAGAAATGTGGTTATGATATTTGATTTGCAAGTAGGCTCGTGGTTTCTTGGACTGCATTGATTTTCTTGATATATGGCGGTCAGGTTAAATCCCCTTTTGGCTTGTTTGAAACAATGGTTGCCTGAACCGTTCCACTACAGGGTGCATGGTTAAAACCCTGGATAGACAGCTTTAATTAGTTAAATAGTCATATTCTTATAAAGTTTTGACATCTTTTTGTTTGATGAAGCATAGAGGAAAAAGACTATCAAGGAAAAAGGTATTTATGAGAAGGAAGCTCTTTCTGAAATGTTATTTTTAGAACTCTGATTTGATAATCTATCAATATGACCTTCACCTTGGCGTTGGTGAATCTACTAACCCTTCTACACTCATCAGTGAAGAAGGTAATGGAAGCTGTTGGGAATGCCATGTAACTTACATAGGAGTAATTGTGGTCGAAGTAAATTTGGATCATAGATC

Fln Alignment:

Contig18337___PGGSASTATPSHMYALGPNTXXXXXXXXXXXXNKPPAAQGFTKEVYLVWDDEAMSMEERRTSLAKYQVHDVTSQMSSVDAAIDRRILESRLAGRMGF
I1KQF2_______________PGGAASN---SHSYASGPNTGGPSIGPPPVIANKAPATQPATNEVYLVWDDEAMSMEERRMSLPKYQVHDESSQMSSIDAAIDKRILESRLAGRMAF

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
281			14	85	0.993533
282			14	85	0.993533
289		85		14	0.993533
307	85		14		0.993533
339		14		85	0.993533
500	88		11		0.923564
511		88		11	0.923564
539		87		12	0.992554
716		14	85		0.993533
717	14		85		0.993533
949	20	80			0.995493
1007		10		90	0.90298
1079			12	87	0.992554
1101	88		11		0.923564
1114	88		11		0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
820	831	GGT GGT GGT GGT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain