SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18322

Length: 1352 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18322

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Galactinol synthase n=1 Tax=Coffea arabica RepID=E0X627_COFAR	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	79%
Sma3	Galactinol synthase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Inositol 3-alpha-galactosyltransferase.	EC:2.4.1.123	-	5.627e-30	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Galactose metabolism	00052		5.627e-30	%

Source	Gene names
Sma3	AT4g26250; At1g09350; At1g56600; At1g60450; At1g60470; At2g47180; At4g26250; At5g23790; At5g30500; AtGolS1; AtGolS2; AtGolS3; CjGolS; F14J9.1; F25P12.95; F8A5.2; GAS1; GAS2; GOLS1; GS; GSVIVT00002727001; GSVIVT00019669001; GSVIVT00022558001; GSVIVT0002255

Source	GOs	Term	Type	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	inositol 3-alpha-galactosyltransferase activity	GO:0047216	Molecular Function	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-
Sma3	Intermediate filament protein, conserved site	IPR018039	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G60470.1	AtGolS4, GolS4 galactinol synthase 4 chr1:22279181-22280454 REVERSE LENGTH=334	74%
RefSeq	Arabidopsis thaliana	NP_176250.1	galactinol synthase 4 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002314613.1	predicted protein, partial [Populus trichocarpa]	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NS25

Fln msg:

Fln protein: MAPEVTAEVLINTAGGKAMAVSGLRSGYSKRAYVTFLAGAGDYVKGVVGLVKGLRKVNSAYPLIVAVLPDVPEEHMQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPKELGHPPSLYFNAGMFVFEPSKLTYDTLIETLRVTRPTPFAEQDLLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSTDSMPDSETLSELQQMTSSSILAAAFPVPNPLLSLSPAA*

Protein Length: 349

Fln nts: ACATGGGGAAGCAGAGTTCACTCACTGAGCGGCATTTGCTTAGTAATTGTGAGGTAGGGTTTTCTGGGTCGTCTTCTTGTTCAGACAGAGATTTGTGCTTCAGGGAATAGAG_-_ATGGCTCCAGAGGTAACGGCCGAGGTATTGATCAACACTGCTGGAGGTAAGGCGATGGCGGTGAGCGGCCTGCGTAGCGGATACTCGAAGAGAGCTTATGTGACGTTCTTGGCTGGAGCAGGCGACTACGTCAAGGGCGTTGTCGGCCTCGTAAAAGGCCTGCGCAAGGTTAATTCGGCGTATCCCCTCATCGTAGCCGTTCTTCCAGATGTTCCCGAGGAACACATGCAGCTTCTGAGGAGTCAGGGTTGCATTGTTCATGAAATTGAGCCCATCTATCCTCCGGAGAACCAGGTCCAGTTTGCCATGGCTTATTATGTCATCAATTATTCCAAGCTCCGGATATGGGAGTTCGAGGAATACAGCAAACTTATATACCTGGATGCAGACATTCAAGTGTATGAGAACATCGATCACCTCTTCGATCTTCCGGACGGCCATTTCTATGCTGCGATGGACTGCTTTTGTGAAAAGACGTGGAGCCACACTCGGCAGTACAAGATCGGTTACTGCCAGCAGTGCCCGGAGAAGGTGCAGTGGCCAAAAGAATTAGGACATCCCCCTTCCCTCTACTTTAATGCGGGCATGTTCGTGTTCGAGCCCAGCAAGCTGACGTACGATACGCTCATTGAAACCCTAAGGGTCACCCGTCCCACGCCCTTCGCGGAGCAGGATCTCTTGAACATGTTCTTTAACAAGGTGTACAAACCAATTCCCTTGGCCTACAATCTGGTCTTGGCCATGCTGTGGCGCCACCCGGAGAACGTGGATTTGGACGGAGTGAAAGTCGTCCATTACTGTGCTGCCGGATCGAAGCCATGGAGGTACACAGGCAAGGAGGAGAACATGGACAGAGAAGATATAAAGATGTTGGTAAAGAAGTGGTGGGATATCTATAACGATCCGTCCTTGGACTTCAAATCGACTGACTCGATGCCCGATTCGGAGACACTCTCAGAGCTGCAACAGATGACTAGCAGCTCCATACTGGCTGCAGCATTTCCTGTACCAAACCCTTTGCTCTCTCTTTCGCCTGCCGCTTAG___GCAACTTAATGTGGTTATCGGTCGGCAGAAGATCGATTCTTATGCAATACAAAGTGTGCTTGTCAAGGTGGTCACGCAGTTCCGTCTCATTATTTGCGAAACATACCACTGACATCGTTTGTATTTTTGTATTTATAGCCGAGAGGCTCGTCGTGCCCTGAGCCAGCCATTAATGAAAATGATAATTGATAAATTT

Fln Alignment:

Contig18322___MAPEVTAEVLINTAGGKAMAVSGLRSGY-SKRAYVTFLAGAGDYXXXXXXXXXXXXXXNSAYPLIVAVLPDVPEEHMQLLRSQGCIVHEIEPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKLIYLDADIQVYENIDHLFDLPDGHFYAAMDCFCEKTWSHTRQYKIGYCQQCPEKVQWPKELGHPPSLYFNAGMFVFEPSKLTYDTLIETLRVTRPTPFAEQDLLNMFFNKVYKPIPLAYNLVLAMLWRHPENVDLDGVKVVHYCAAGSKPWRYTGKEENMDREDIKMLVKKWWDIYNDPSLDFKSTDSMPDSETLSELQQMTSSSILAA
A9NS25_______________MAPEVPSGAF----GGSK--VGALTSGYNSKRGYVTFLAGNGDYWKGVVGLAKGLRKVNSAYPLVVAMLPDVPEEHREILRSQGCICREIVPIYPPENQVQFAMAYYVINYSKLRIWEFEEYSKMVYLDADIQVFENIDNLFDMPDGYFYAVMDCFCEKTWSHTPQYKIGYCQQCPDKVQWSSELGLPPALYFNAGMFVFEPSKLTFDSLIETLRITAPTPFAEQDFLNMYFQKMYKPIPLVYNLVLAMLWRHPENVDLDKVKVVHYCAAGSKPWRYTGKEANMQREDIKVLVQKWWDVYDDESLDFKAEDSIPEAETLSDLQQITANSLLAA

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
57	66		33		0.997452
69			33	66	1.0
70		33		66	1.0
83		50	50		1.0
89			83	16	0.994512
108	40		60		1.0
150	40		60		1.0
151		40		60	1.0
155		40		60	1.0
164	40		60		1.0
188		40		60	1.0
190		25	50		0.995533
193			66	33	0.997452
230	66	33			0.997452
891	13		86		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain