SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18237

Length: 1816 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18237

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	GDP-mannose 3,5-epimerase 1 n=27 Tax=Spermatophyta RepID=GME1_ORYSJ	-	-	91%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G28840.1	GME GDP-D-mannose 3',5'-epimerase chr5:10862472-10864024 REVERSE LENGTH=377	91%
RefSeq	Arabidopsis thaliana	NP_001190417.1	GDP-mannose 3,5-epimerase [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002319639.1	predicted protein [Populus trichocarpa]	93%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LK78

Fln msg:

Fln protein: MGSTGADGLAYGAYTYEDLEREPYWPSEKVRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDRFEMWGDGKQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE*

Protein Length: 380

Fln nts: ATGGGGTGCGTTCTTCCGAGATTTGCACTCTGATAAGCTTGAGGGAGCTCTTCAAATCAAGGCTTGTTTTATATTTTCCTTTCTTTGAACATC_-_ATGGGAAGCACTGGAGCTGATGGACTGGCCTATGGGGCATACACCTATGAAGACCTGGAGAGAGAGCCATACTGGCCTAGTGAAAAAGTGAGAATTTCCATTACTGGAGCTGGGGGTTTCATTGCCTCCCATATTGCCAGGAGATTGAAGTCTGAAGGCCATTACATCATTGCCTCTGATTGGAAGAAGAACGAGCACATGACTGAGGATATGTTCTGCAATGAATTCCATCTTGTGGATCTCAGAGTTATGGAAAATTGTTTGGCTGTTACCAAAGGGGTTGACCATGTTTTTAACTTGGCTGCAGACATGGGCGGTATGGGATTCATTCAGTCTAATCATTCTGTTATCATGTACAACAACACGATGATCAGCTTCAACATGATTGAAGCTGCCAGAATCAATGGTGTCAAGAGGTTTTTCTATGCTTCTAGCGCATGTATTTATCCCGAATTCAAACAATTGGAGACCAACGTGAGCTTGAAGGAGTCTGATGCCTGGCCAGCTGAGCCTCAAGATGCCTATGGCTTGGAAAAACTTGCCACAGAAGAATTGTGCAAGCACTACAATAAGGACTTTGGTATAGAATGCCGGATAGGGCGTTTCCACAACATTTATGGTCCTTTTGGCACATGGAAGGGTGGACGTGAGAAGGCACCTGCTGCCTTTTGCAGGAAGACACTCACATCCACCGATAGGTTTGAAATGTGGGGCGATGGCAAGCAAACACGATCTTTTACATTCATTGATGAATGTGTGGAGGGTGTCCTGAGATTGACTAAATCAGACTTTAGAGAGCCAGTGAATATTGGCAGTGATGAAATGGTTAGCATGAATGAGATGGCTGAAATGGTGCTTAGCTTTGAGAACAAGAAGTTGCCAATACATCACATCCCTGGGCCAGAGGGTGTACGTGGTCGGAATTCTGATAATACATTGATCAAGGAAAAGCTAGGCTGGGCACCAACCATGAAGCTGAAGGATGGCTTGAGGATTACTTATTTCTGGATCAAGGAACAAATTGAGAAAGAAAAGGTGCAGGGAATTGATCTCTCCATCTATGGATCCTCTAAGGTGGTTGGCACGCAAGCCCCTGTTCAACTTGGATCTCTCCGTGCTGCGGATGGAAAGGAATGA___GGACAAATTCCTTGATCTCTAGTAGAATAAATAAATCAATGTTAACTCAGTTTATTATAAGCTGGTTAGCGGCTACATGCTTCTTGATTTGGTATCCAAAATTATTTTTCCTGCTATTGAAGTATCTCTGAAGGGTATATTCTGTTATTTCATGGGAATTTTCGGAAAAAATCACATAGAGAGTATTTGGTGGACTGCTTCTGGTTAGAAGCAGTCATTTTCTTTTTAGTTCAAAAGTTCATCACCCTGTGGTGCTGATGGCGAGGATCATCTGATCCTCAAAAGTCTATGAAAATGCAACCATGATGATTTTATAGGAGGAGGTCACTGCAAAAGAATCTTTTGAGATGTCAAAGATACATTTAAGGATCTCTGCAATGTGTATCCAACTTTGCACAAACTTCTATATCTGATGTGCAATGCTACTTAACAATTTGAGCCATATCGGTGCTTGTTTAGTTGTGATATTTGGTTTTTAACTTAATGTCCTATGTCTAAAATCTTAGTAGCTGAATTATAATTTTTGTCTGTTTTGATGAATGTGGGTTAAACACACATTTGCAAAATTTATTTACATATTTATCTC

Fln Alignment:

Contig18237___MGSTGADGLAYGAYTYEDLEREPYWPSEKVRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTLTSTDRFEMWGDGKQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMKLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE
B8LK78_______________MGSTGADGVAYGAYTYEDLEREPYWPSEKVIISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCNEFHLVDLRVMENCLAVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKTITSTDRFEMWGDGKQTRSFTFIDECVEGVLRLTKSDFREPVNIGSDEMVSMNEMAEMVLSFENKKLPIHHIPGPEGVRGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIEKEKVQGIDLSIYGSSKVVGTQAPVQLGSLRAADGKE

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
935		7		92	0.999602
936	7		92		0.999602
937			92	7	0.999602
938		92		7	0.999602
1140		14		85	0.993533
1215	25		75		1.0
1224			87	12	0.992554
1301		10	90		0.90298
1502		78		21	1.0
1504	41		58		1.0
1531	9	88			1.0
1674	83		16		0.999991
1690	87	12			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain