SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18235

Length: 1551 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18235

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Succinic semialdehyde reductase isofom1 n=1 Tax=Solanum lycopersicum RepID=B1Q3F6_SOLLC	-	-	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	3-hydroxyisobutyrate dehydrogenase activity	GO:0008442	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	phosphogluconate dehydrogenase (decarboxylating) activity	GO:0004616	Molecular Function	-
Sma3	pentose-phosphate shunt	GO:0006098	Biological Process	-
Sma3	valine metabolic process	GO:0006573	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	3-hydroxyisobutyrate dehydrogenase-related, conserved site	IPR002204	-	-
Sma3	3-hydroxyacid dehydrogenase/reductase	IPR015815	-	-
Sma3		IPR006183	-	-
Sma3	6-phosphogluconate dehydrogenase, NADP-binding	IPR006115	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G25530.1	GHBDH, ATGHBDH, GLYR1, GR1 glyoxylate reductase 1 chr3:9271949-9273514 REVERSE LENGTH=289	79%
RefSeq	Arabidopsis thaliana	NP_566768.1	glyoxylate reductase 1 [Arabidopsis thaliana]	79%
RefSeq	Populus trichocarpa	XP_002320548.1	predicted protein [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNG8

Fln msg:

Fln protein: MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTMSRCEELVEQGASIGSTPAEVVKKCNYTIAILSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTITSTKINEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKTLYDEIIPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGLVLADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPAAFPLKHQQKDMRLALALGDEVEVSMPVAAAANEAFKKAKSLGLSDQDFSAVYQVVKEPSAGTKV*

Protein Length: 295

Fln nts: ATGGGGAGAAGATGTGTAGTGGCGTTTAGTCACGCATATGAAAAAGACTATAGAGATTCCGATTCCCTCGAAAGTGTGATCTACAGTTCTTACATGTATTTTTAATATCTATGATAGATAACAGGCGACAAGGAGACAGTAACAGAGGAGGCCTTACTATGAGCATTCTGTAAATCTCTGTTTCTGGAAAACAATTAGAACAACAAATCAGAAGCTCAGGGAAAATTTTCATCCATAACAAAAGC_-_ATGGAGGTCGGTTTCTTGGGCTTGGGAATTATGGGCAAGGCAATGGCAGTAAATCTACTCCGAAATGGCTTCAAAGTGACCGTGTGGAATAGGACAATGTCTAGGTGTGAAGAACTTGTTGAGCAAGGTGCTTCCATAGGAAGCACTCCTGCCGAAGTTGTAAAGAAGTGCAACTATACCATAGCCATCCTCTCTGATCCTCCTGCTGCCCTCTCGGTGGTTTTCGGCAAGGATGGTGTCCTAGAGCAAATGTGTACAGGAAAAGGATACATTGACATGTCAACAGTTGATACTATCACTTCAACAAAGATCAATGAGGCAATCATTGAAAAGGGGGGGAGATTTCTTGAGGCTCCTGTCTCAGGCAGCAAGAAGCCCGCAGAAGATGGCCAACTGATTATTCTTGCTGCTGGTGATAAGACCTTGTATGATGAGATCATACCTTCCTTTGATGTAATGGGGAAGAAAGCCTTCTTTCTAGGGGAGGTTGGAAATGGAGCTAAGATGAAGCTTGTTGTCAACATGATTATGGGCAGCATGATGAATGCATTTTCTGAAGGCCTTGTCCTAGCTGATAAGAGTGGATTAAGCCAGACAACACTATTAGATGTCTTGGAATTAGGCGCAATTGCTAATCCAATGTTCAAGTTGAAAGGTCCAGCTATGATTCAAGAGAAGTTTCCCGCAGCATTTCCTTTGAAGCACCAACAAAAGGATATGCGATTGGCACTTGCTCTTGGAGATGAGGTCGAAGTATCTATGCCTGTAGCTGCTGCTGCTAATGAGGCTTTCAAGAAGGCCAAAAGCTTGGGGCTTAGTGATCAAGACTTTTCAGCTGTGTATCAGGTAGTGAAGGAACCGAGTGCAGGAACTAAAGTCTAA___TGGGGAATCCATGTATTGGATCATTATTACTGTGCAATGCTTTTGTCTTGCATATGCCATTTGCCTCTGGAGCATTTTGCCTTCAGGCAAATTAAAGATAATGGACATGCAGATGGCATGGTTCTTAGTATTGGAAACTTTGTAAGTCAGAAAGTTCAGTTGACATGGTTGAGTTTCAGAGAGTCAGTTTCTAACTTCCTTCAAATGTTTGGGACAGTATGATTAATAGATCTTTATATTTTGTGTTTGCATGTATGCATGCCATCACCTTCTATCTTTAATGAATATTTTGAGTATGATTCAGCGTATCCTGAATTATTTCAAAGCAGTTTCACTTGAATCTGTCACCGCTTTTGTAATTAACAACCAAGGCATAGCTAGGATATGCATGGCACTAAATCATGTGGAAATATATTCATCTCAC

Fln Alignment:

Contig18235___MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTMSRCEELVEQGASIGSTPAEVVKKCNYTIAILSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTITSTKINEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKTLYDEIIPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMMNAFSEGLVLADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPAAFPLKHQQKDMRLALALGDEVEVSMPVXXXXXXXXXXXXSLGLSDQDFSAVYQVVKEPSAGTKV
A9NNG8_______________MEVGFLGLGIMGKAMAVNLLRNGFKVTVWNRTLSRCEELVEQGASMGSTPAEVVKKCKYIIAMLSDPPAALSVVFGKDGVLEQMCTGKGYIDMSTVDTVTSTKISEAIIEKGGRFLEAPVSGSKKPAEDGQLIILAAGDKSLYDEVMPSFDVMGKKAFFLGEVGNGAKMKLVVNMIMGSMITAFSEGLALADKSGLSQTTLLDVLELGAIANPMFKLKGPAMIQEKFPTAFPLKHQQKDMRLALALGDEVEVSMPVAAAANEAFKKGISLGLSDQDFSAVYQVVKESSAASKV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
436		16		83	0.994512
562	85		14		0.993533
1146	5		95		0.997749
1149		95	5		0.997749
1196			90	9	1.0
1223	90	3			0.996531
1456			33	66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
1014	1025	GCT GCT GCT GCT	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain