SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18232

Length: 2153 nt

UniGene Fasta

>sp_v3.0_unigene18232
TTATAAATTTGGTTTTGCTTCCCTAGCTTTTAGTTTTTTTAACAGGCCGACCGACTATGACGAAAGGAAAATACGGACATGATCAAAACCCAACATCCATATAAAACCGGAACCATGCATTCTTTCACTCCCTCCCTCTTCTCCATAAAACCCTAAATCTCTGCACTCGCCAGCTACGATTTATTCTGCCTCCAGCATTTTCGTCCTTACCAGTTTCGTCCTCCTGCCTCCAGCGGTTTCGACACATAGCCGCTGCGATTCTGGGGAGTTTCTTTGGCTTAGATTTTTGGGGTAAAATTCTGGGTATTGTGGTTTGCTCACACTAATTATCCTGTCATGGATCATCAACAGCAGCAGTGGATGATGCAGCAACAAACTCAACAACAGTATCAGCAGCCGCAGTATTCGAATGACGAAATCCGGACACTGTGGATCGGGGATTTGCAGTATTGGGTGGATGAAAATTATCTCCATACTTGCTTTTCGCAAACCGGAGAGGTTGTTTCTATAAAGGTGATTCGGAACAAAGCTACAGGCTATCCGGAAGGTTATGGTTTTGTGGAGTTTATTTCCCATGCAGCAGCTGAGAGGATTCTTCAAACATACAATGGTACACAGATGCCTGGCACAGAGCAACTTTATAGATTAAATTGGGCTTCCTTTGGTTTAGGAGAAAGGCGCCTTTTAACAGGACCGGAGCATTCTATATTTGTGGGAGATTTGGCTCCAGATGTCACAGATTATTTGCTACAAGAGACTTTTCGATCTCGATACCCATCAGTGAGAGGTGCAAAGGTTGTGACAGATCCCTCTACAGGCTGTTCAAAAGGTTATGGATTTGTTAAGTTTGTTGATGAGACTGAGAGAAATCGTGCCATGACGGAAATGAATGGTGTGTATTGTTCTACGAGACCTATGCGCATTAGTGCAGCTACACCAAAGAAGTCTGTGGGTTATCAACAACAATACACTCCTAAAGTTGCCTATCAAACACCAACCTATAGTGCGGCACCTGCTCAAGTGTTTCAATCAGATGATCTAAACAATACTACAATATTTGTTGGTGGCTTGGATCCAACTGTCTCGGAGGAAGATCTAAGGCAAATCTTTGGCCAGTTTGGGGAACTTGTATATGTCAAAATACCTGTTAACAAGGGATGTGGATTTGTGCAGTTTGGTAACAGGGCCTGTGCTGAGGAAGCATTGCAAAGGGTACATGGTACTGTTATTGGTCAGCAGACTGTGCGCCTTTCCTGGGGTCGAAGTCCTGCAACCAAGCAGGACCAGCCAGCGGGGTGGGGTCAGGTTCAAGCAGATCCAAATCAGTGGAATGCAGCTTACTATGGTTATGGGCAGGGGTATGATGCTTATGGTTATGCTGCACCTCAAGATCCATCAGCATATGGTTATGGGGCATACCCTGCTACAATGAATTATCAGCAACAGACTGAGGTTCAAGATTTATCAGCAGCTGGAATGACAAACACCATTCAAGTTCCGGACCATAAGGAAGAGGAAATATTTGATCCTTTGGCTCCTCCTGATGTTGAAAAGTTGAATGCAGCATATATTGCTCTCCACGAGCCCTGGTTGGTTGGGAGAAACTTTTGGTTGAAGTCCTCTGAACTGTCGGCTTAGACTACAGTTTTATACCAGCGGATATTTAGGTGTTACTTCAAATGTATTTTTTTAAAGACGCTTCCTTAACACTGGTGAGCATCCCCACCCATGAAGTGGGATGTTGCTTAAGTTGTACACACCTGACCCAACATAATGGCCCTTGGAGGGAATGATGGCTCCACCTGGCCCAACTTGCAGACAATGGTTCCCTTGTGGGTAGCGTGCTGTGTCCTACTTGAGGCTCTAACCTTGTGTGGATTTCTTGCTTTCACCAACTTGACTGCCCTCTTGTGGCTATCCTTAACCTTAATTAGATTAGATTTGCACGGAAGTAAAGTGGAATAATTGATGGCAACTTTTGGTCTTCTGCAATTGTATGTAACATGATGCATGCTTATTGGCGGTGTAAATTCCATACCTTTGTCTTGGAAATTTATCGTGATGTGATCATAATTAATTACTATATGTATATTTGTATCAGTTCGCTGGACTTTTTGAACAATCTAAAATGGTCCTTGACAGCTACCAGCGTT

Ace file of the UniGene sp_v3.0_unigene18232

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif-containing protein [Arabidopsis thaliana] gb\|AAL67015.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AAM45052.1\| putative DNA binding protein ACBF [Arabidopsis thaliana] gb\|AED92689.1\| RNA recognition motif-containing	-	-	0.0	60%
FL-Next	sp=Polyadenylate-binding protein RBP47B'; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%
Sma3	Nuclear acid binding protein, putative	-	-	1.15e-22	-

Source	Gene names
Sma3	AT1G11650; AT4G27000; AT4g27000; AT5g54900/MBG8_17; At1g11650; At1g47490; At1g47500; At3g19130; At4g27000; At4g27000/F10M23.340; At5g19350; At5g54900; B1099H05.42; CHLREDRAFT_193148; F10M23.340; F14J22.16; F16N3.23; F16N3.24; F25C20.21; GSVIVT00011496001;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Twin-arginine translocation pathway, signal sequence	IPR006311	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Domain of unknown function DUF1767	IPR013894	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19350.1	RNA-binding (RRM/RBD/RNP motifs) family protein chr5:6518978-6521295 FORWARD LENGTH=425	63%
RefSeq	Arabidopsis thaliana	NP_197436.1	RNA recognition motif-containing protein [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002313332.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q8VXZ9

Fln msg:

Fln protein: MDHQQQQWMMQQQTQQQYQQPQYSNDEIRTLWIGDLQYWVDENYLHTCFSQTGEVVSIKVIRNKATGYPEGYGFVEFISHAAAERILQTYNGTQMPGTEQLYRLNWASFGLGERRLLTGPEHSIFVGDLAPDVTDYLLQETFRSRYPSVRGAKVVTDPSTGCSKGYGFVKFVDETERNRAMTEMNGVYCSTRPMRISAATPKKSVGYQQQYTPKVAYQTPTYSAAPAQVFQSDDLNNTTIFVGGLDPTVSEEDLRQIFGQFGELVYVKIPVNKGCGFVQFGNRACAEEALQRVHGTVIGQQTVRLSWGRSPATKQDQPAGWGQVQADPNQWNAAYYGYGQGYDAYGYAAPQDPSAYGYGAYPATMNYQQQTEVQDLSAAGMTNTIQVPDHKEEEIFDPLAPPDVEKLNAAYIALHEPWLVGRNFWLKSSELSA*

Protein Length: 435

Fln nts: TTATAAATTTGGTTTTGCTTCCCTAGCTTTTAGTTTTTTTAACAGGCCGACCGACTATGACGAAAGGAAAATACGGACATGATCAAAACCCAACATCCATATAAAACCGGAACCATGCATTCTTTCACTCCCTCCCTCTTCTCCATAAAACCCTAAATCTCTGCACTCGCCAGCTACGATTTATTCTGCCTCCAGCATTTTCGTCCTTACCAGTTTCGTCCTCCTGCCTCCAGCGGTTTCGACACATAGCCGCTGCGATTCTGGGGAGTTTCTTTGGCTTAGATTTTTGGGGTAAAATTCTGGGTATTGTGGTTTGCTCACACTAATTATCCTGTC_-_ATGGATCATCAACAGCAGCAGTGGATGATGCAGCAACAAACTCAACAACAGTATCAGCAGCCGCAGTATTCGAATGACGAAATCCGGACACTGTGGATCGGGGATTTGCAGTATTGGGTGGATGAAAATTATCTCCATACTTGCTTTTCGCAAACCGGAGAGGTTGTTTCTATAAAGGTGATTCGGAACAAAGCTACAGGCTATCCGGAAGGTTATGGTTTTGTGGAGTTTATTTCCCATGCAGCAGCTGAGAGGATTCTTCAAACATACAATGGTACACAGATGCCTGGCACAGAGCAACTTTATAGATTAAATTGGGCTTCCTTTGGTTTAGGAGAAAGGCGCCTTTTAACAGGACCGGAGCATTCTATATTTGTGGGAGATTTGGCTCCAGATGTCACAGATTATTTGCTACAAGAGACTTTTCGATCTCGATACCCATCAGTGAGAGGTGCAAAGGTTGTGACAGATCCCTCTACAGGCTGTTCAAAAGGTTATGGATTTGTTAAGTTTGTTGATGAGACTGAGAGAAATCGTGCCATGACGGAAATGAATGGTGTGTATTGTTCTACGAGACCTATGCGCATTAGTGCAGCTACACCAAAGAAGTCTGTGGGTTATCAACAACAATACACTCCTAAAGTTGCCTATCAAACACCAACCTATAGTGCGGCACCTGCTCAAGTGTTTCAATCAGATGATCTAAACAATACTACAATATTTGTTGGTGGCTTGGATCCAACTGTCTCGGAGGAAGATCTAAGGCAAATCTTTGGCCAGTTTGGGGAACTTGTATATGTCAAAATACCTGTTAACAAGGGATGTGGATTTGTGCAGTTTGGTAACAGGGCCTGTGCTGAGGAAGCATTGCAAAGGGTACATGGTACTGTTATTGGTCAGCAGACTGTGCGCCTTTCCTGGGGTCGAAGTCCTGCAACCAAGCAGGACCAGCCAGCGGGGTGGGGTCAGGTTCAAGCAGATCCAAATCAGTGGAATGCAGCTTACTATGGTTATGGGCAGGGGTATGATGCTTATGGTTATGCTGCACCTCAAGATCCATCAGCATATGGTTATGGGGCATACCCTGCTACAATGAATTATCAGCAACAGACTGAGGTTCAAGATTTATCAGCAGCTGGAATGACAAACACCATTCAAGTTCCGGACCATAAGGAAGAGGAAATATTTGATCCTTTGGCTCCTCCTGATGTTGAAAAGTTGAATGCAGCATATATTGCTCTCCACGAGCCCTGGTTGGTTGGGAGAAACTTTTGGTTGAAGTCCTCTGAACTGTCGGCTTAG___ACTACAGTTTTATACCAGCGGATATTTAGGTGTTACTTCAAATGTATTTTTTTAAAGACGCTTCCTTAACACTGGTGAGCATCCCCACCCATGAAGTGGGATGTTGCTTAAGTTGTACACACCTGACCCAACATAATGGCCCTTGGAGGGAATGATGGCTCCACCTGGCCCAACTTGCAGACAATGGTTCCCTTGTGGGTAGCGTGCTGTGTCCTACTTGAGGCTCTAACCTTGTGTGGATTTCTTGCTTTCACCAACTTGACTGCCCTCTTGTGGCTATCCTTAACCTTAATTAGATTAGATTTGCACGGAAGTAAAGTGGAATAATTGATGGCAACTTTTGGTCTTCTGCAATTGTATGTAACATGATGCATGCTTATTGGCGGTGTAAATTCCATACCTTTGTCTTGGAAATTTATCGTGATGTGATCATAATTAATTACTATATGTATATTTGTATCAGTTCGCTGGACTTTTTGAACAATCTAAAATGGTCCTTGACAGCTACCAGCGTT

Fln Alignment:

Contig18232___DEIRTLWIGDLQYWVDENYLHTCFSQTGEVVSIKVIRNKATGYPEGYGFVEFISHAAAERILQTYNGTQMPGTEQLYRLNWASFGLGERRLLTGPEHSIFVGDLAPDVTDYLLQETFRSRYPSVRGAKVVTDPSTGCSKGYGFVKFVDETERNRAMTEMNGVYCSTRPMRISAATPKKSVGYQQQYTPKVAY--QTPTYSAAPAQVF---QSDDLNNTTIFVGGLDPTVSEEDLRQIFGQFGELVYVKIPVNKGCGFVQFGNRACAEEALQRVHGTVIGQQTVRLSWGRSPATKQDQPAGWGQVQADPNQWNXXXXXXXXXXXXXXXXXXXXXSAYGYGAYPATMNYQQQTEVQDLS---AAGMTNTIQVPDHKEEEIFDPLAPPDVEKLNAAYIALHEPWLVGRNFWLKSSELSA
Q8VXZ9_______________EEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPG--QD---GW-VTQADPNQWN-GYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAGGVAGA-------EQELYDPLATPDVDKLNAAYLSVHASAILGRPMWQRTSSLTS

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1522	93			6	0.999453
1582		91		8	0.999766
2022			10	90	0.90298
2112			50	33	1.0
2113			50	33	1.0
2130	33		66		0.997452
2131	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain