SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18231

Length: 2681 nt

UniGene Fasta

>sp_v3.0_unigene18231
ATGGGGACGTTTGTTGCACCTTCCCAACATTTTTTAGAAGTCAAAACCATGAGTGGGATCTCCGAGGACCAAAAAGATTTATAGAATCATGCAAGTGGAGTTTGCAAGTTGCCTTTCACAAATATTCGTCTACGTATTTCGTCGCTTCATAGGAATCTGAATCTTAACTTTCTTCAACTATGGACCGACTCTCCTTGTTTCATTGGGGCTCACTACATGTTAGGGCTTTGTGATTAAAAATATGATTTATGTAGTTGAATATCACAAATGGTTGGAATCCGGCAAGGAGTAATATTGATTTGAGATTTAAATGTGGTTGAAATTTGGAGAGAAAGTGGTATGTGGGAAATAAGGAAAAGCCGGCAGGGTTCAGCTTTTCCAGGTTTCGACCGAGGGGAATTTTGTCAGGAGCTCTGTTCGGTCATAAGCTTCAAGCAACCGTGTTTTTCATCCTCCATTTCATCGTCTCCATTGTAGTGTACTTGCAAGGTGTATAATCGGTGGAGTTTTTCTGTAGAAGCGGCCAATCATGTGTGGGATACTTGCTGCATTGGGTTGCATCGATGTATCTCAGGCCAAACGAGCTCGAATTCTGGAACTCTCCCGAAGGTTAAGGCACAGAGGACCAGATTGGAGTGGGATTAGCCACCATGGAAATTGTTTTCTAGCTCACCAGAGATTGGCCATAGTGGATCCAACGTCTGGGAATCAACCATTATATAATGAGGATAAAACAATAGTTGTCACGGTGAATGGAGAGATTTACAATCACGAGGATTTAAGGACAAAACTCGGATCTCACAAGTTCAGGACCAGGAGTGACTGTGAAGTTATTGCCCATCTTTATGAAGCATATGGGGAGGACTTTGTCAACATGTTGGATGGAATGTTCTCTTTTGTTCTTCTGGACACCCGTGACAATAGTTTTATTGCTGCTCGAGATGCAATTGGCATCACACCCCTTTACACGGGCTGGGGCATTGATGGATCAATATGGTTTGCATCTGAAATGAAAGCTTTGAATGATGACTGTGAGCGCTTTGAGTGCTTTCCTCCTGGACACTTATACTCCAGTAAATTAGGAGGCTACAAAAGGTGGTACAACCCACCTTGGTACTCCGAGGACATTCCCTCAACCCCATATGATCCCTTGGTTTTGCGAAAAGCATTTGAGCAGGCAGTTATAAAAAGACTTATGGCAGATGTTCCTTTTGGTGTACTATTGTCGGGTGGTCTGGATTCTTCATTAGTTGCTGCTGTGGCTTCACGCTATTTGGCGGGCACCGAGGTTGCTAGACAGTGGGGAGCAAAACTCCATACCTTCTGCATTGGTCTGCAGGGTTCACCAGACTTGAAGGCTGCAAGAGAAGTAGCAGATTACCTTGACAGTTTTCATCATGAATTTAACTTCACTGTACAGGAAGGGATAGATGCAATTGAGGAGGTTATCTATCATATTGAAACATATGATGTGACCACAATTAGAGCAAGCACACCTATGTTCCTGATGTCTCGTAAAATTAAGTCTTTGGGAGTAAAGATGGTTCTTTCCGGAGAAGGCTCAGATGAGATATTTGGGGGTTACTTGTATTTCCACAAGGCTCCCAACAAAGAGGAGCTACATCGTGAAACATGTCAAAAGATTAAGTCTCTTCATCTATATGACTGCCTGAGAGCTAATAAGTCAACATCAGCATGGGGTGTTGAGGCTCGTGTGCCGTTTCTAGATAAGGAGTTTATCAATATTTCCATGGGAATTGATCCAGAGTGGAAGATGGTGCGGCCTGATCTTGGGCGCATTGAGAAGTGGATCCTTCGCAAGGCATTTGACGATGTGGAGAATCCTTATCTACCAAAGCATATTTTGTACAGGCAAAAAGAGCAATTCAGCGATGGTGTTGGTTATAGTTGGATTGATGGTTTGAAAGAGCATGCTGCAAATCATGTTACCAATATGATGATGGCAAATGCAAAGTACATTTACCCTGAGAATACACCCACGACAAAGGAGGCATACTACTACAGGATGATATTTGAAAGATTCTTTCCTCAGAATGCTGCACGCTTGACTGTACCTGGAGGCCCTAGTGTGGCTTGCAGCACTGCCAAAGCTTTAGAATGGGATGCTGCATGGTCTAGGAACCCCGATCCTTCTGGCAGGGCTGCTTTAGGTGTTCATGTGGATGCTTACAAAGAAAATGCAGATATCGGCAATGGCAACGAGGAAGTATCAGCAGATTTTTCAATTAAAAAGCCAAAATTTCTAGATGGTGGTGTGAAAGTTGCGGTTGAGCCATAAGACATCCATGCTTCTCAAATGTAGTTTTGGCTTAGTATATACTTGTGGAGCTCTTGGATGACCGAGGCTTTTGTATTTTTGCTGTCTAGGTTGTATAGTGTGGCACCACAGAGATGCTTAGAAATTTAGAAGATGAATTTAGATGGATATGAGTGTTATATTAACTTCTAAATTTGGTCATTGGATCTCAATGTTGATGTCCAGTGATGGAATATGTATTGCTGTTAGGCATCTTCTAGTGCATTCATAGTTTTTGTGATATCATTGGATCTGGTCCAGTTAATTATTTCCAAAGAAATGAGTTATGGTATGTAACAGCTTCAGTTGCTGGTTAAAAGGAATTATTTATTTGTGCTATATTTTGGTACAATTTTTTGTTTGT

Ace file of the UniGene sp_v3.0_unigene18231

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Asparagine synthetase n=2 Tax=Pinaceae RepID=D9IXC8_PINPS	-	-	97%
FL-Next	sp=Asparagine synthetase; Pinus pinaster (Maritime pine).	-	-	99%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10240.1	ASN3 asparagine synthetase 3 chr5:3212934-3216418 REVERSE LENGTH=578	81%
RefSeq	Arabidopsis thaliana	NP_851272.1	asparagine synthetase 2 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002306310.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D9IXC8

Fln msg:

Fln protein: MCGILAALGCIDVSQAKRARILELSRRLRHRGPDWSGISHHGNCFLAHQRLAIVDPTSGNQPLYNEDKTIVVTVNGEIYNHEDLRTKLGSHKFRTRSDCEVIAHLYEAYGEDFVNMLDGMFSFVLLDTRDNSFIAARDAIGITPLYTGWGIDGSIWFASEMKALNDDCERFECFPPGHLYSSKLGGYKRWYNPPWYSEDIPSTPYDPLVLRKAFEQAVIKRLMADVPFGVLLSGGLDSSLVAAVASRYLAGTEVARQWGAKLHTFCIGLQGSPDLKAAREVADYLDSFHHEFNFTVQEGIDAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHRETCQKIKSLHLYDCLRANKSTSAWGVEARVPFLDKEFINISMGIDPEWKMVRPDLGRIEKWILRKAFDDVENPYLPKHILYRQKEQFSDGVGYSWIDGLKEHAANHVTNMMMANAKYIYPENTPTTKEAYYYRMIFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNGNEEVSADFSIKKPKFLDGGVKVAVEP*

Protein Length: 591

Fln nts: ATGGGGACGTTTGTTGCACCTTCCCAACATTTTTTAGAAGTCAAAACCATGAGTGGGATCTCCGAGGACCAAAAAGATTTATAGAATCATGCAAGTGGAGTTTGCAAGTTGCCTTTCACAAATATTCGTCTACGTATTTCGTCGCTTCATAGGAATCTGAATCTTAACTTTCTTCAACTATGGACCGACTCTCCTTGTTTCATTGGGGCTCACTACATGTTAGGGCTTTGTGATTAAAAATATGATTTATGTAGTTGAATATCACAAATGGTTGGAATCCGGCAAGGAGTAATATTGATTTGAGATTTAAATGTGGTTGAAATTTGGAGAGAAAGTGGTATGTGGGAAATAAGGAAAAGCCGGCAGGGTTCAGCTTTTCCAGGTTTCGACCGAGGGGAATTTTGTCAGGAGCTCTGTTCGGTCATAAGCTTCAAGCAACCGTGTTTTTCATCCTCCATTTCATCGTCTCCATTGTAGTGTACTTGCAAGGTGTATAATCGGTGGAGTTTTTCTGTAGAAGCGGCCAATC_-_ATGTGTGGGATACTTGCTGCATTGGGTTGCATCGATGTATCTCAGGCCAAACGAGCTCGAATTCTGGAACTCTCCCGAAGGTTAAGGCACAGAGGACCAGATTGGAGTGGGATTAGCCACCATGGAAATTGTTTTCTAGCTCACCAGAGATTGGCCATAGTGGATCCAACGTCTGGGAATCAACCATTATATAATGAGGATAAAACAATAGTTGTCACGGTGAATGGAGAGATTTACAATCACGAGGATTTAAGGACAAAACTCGGATCTCACAAGTTCAGGACCAGGAGTGACTGTGAAGTTATTGCCCATCTTTATGAAGCATATGGGGAGGACTTTGTCAACATGTTGGATGGAATGTTCTCTTTTGTTCTTCTGGACACCCGTGACAATAGTTTTATTGCTGCTCGAGATGCAATTGGCATCACACCCCTTTACACGGGCTGGGGCATTGATGGATCAATATGGTTTGCATCTGAAATGAAAGCTTTGAATGATGACTGTGAGCGCTTTGAGTGCTTTCCTCCTGGACACTTATACTCCAGTAAATTAGGAGGCTACAAAAGGTGGTACAACCCACCTTGGTACTCCGAGGACATTCCCTCAACCCCATATGATCCCTTGGTTTTGCGAAAAGCATTTGAGCAGGCAGTTATAAAAAGACTTATGGCAGATGTTCCTTTTGGTGTACTATTGTCGGGTGGTCTGGATTCTTCATTAGTTGCTGCTGTGGCTTCACGCTATTTGGCGGGCACCGAGGTTGCTAGACAGTGGGGAGCAAAACTCCATACCTTCTGCATTGGTCTGCAGGGTTCACCAGACTTGAAGGCTGCAAGAGAAGTAGCAGATTACCTTGACAGTTTTCATCATGAATTTAACTTCACTGTACAGGAAGGGATAGATGCAATTGAGGAGGTTATCTATCATATTGAAACATATGATGTGACCACAATTAGAGCAAGCACACCTATGTTCCTGATGTCTCGTAAAATTAAGTCTTTGGGAGTAAAGATGGTTCTTTCCGGAGAAGGCTCAGATGAGATATTTGGGGGTTACTTGTATTTCCACAAGGCTCCCAACAAAGAGGAGCTACATCGTGAAACATGTCAAAAGATTAAGTCTCTTCATCTATATGACTGCCTGAGAGCTAATAAGTCAACATCAGCATGGGGTGTTGAGGCTCGTGTGCCGTTTCTAGATAAGGAGTTTATCAATATTTCCATGGGAATTGATCCAGAGTGGAAGATGGTGCGGCCTGATCTTGGGCGCATTGAGAAGTGGATCCTTCGCAAGGCATTTGACGATGTGGAGAATCCTTATCTACCAAAGCATATTTTGTACAGGCAAAAAGAGCAATTCAGCGATGGTGTTGGTTATAGTTGGATTGATGGTTTGAAAGAGCATGCTGCAAATCATGTTACCAATATGATGATGGCAAATGCAAAGTACATTTACCCTGAGAATACACCCACGACAAAGGAGGCATACTACTACAGGATGATATTTGAAAGATTCTTTCCTCAGAATGCTGCACGCTTGACTGTACCTGGAGGCCCTAGTGTGGCTTGCAGCACTGCCAAAGCTTTAGAATGGGATGCTGCATGGTCTAGGAACCCCGATCCTTCTGGCAGGGCTGCTTTAGGTGTTCATGTGGATGCTTACAAAGAAAATGCAGATATCGGCAATGGCAACGAGGAAGTATCAGCAGATTTTTCAATTAAAAAGCCAAAATTTCTAGATGGTGGTGTGAAAGTTGCGGTTGAGCCATAA___GACATCCATGCTTCTCAAATGTAGTTTTGGCTTAGTATATACTTGTGGAGCTCTTGGATGACCGAGGCTTTTGTATTTTTGCTGTCTAGGTTGTATAGTGTGGCACCACAGAGATGCTTAGAAATTTAGAAGATGAATTTAGATGGATATGAGTGTTATATTAACTTCTAAATTTGGTCATTGGATCTCAATGTTGATGTCCAGTGATGGAATATGTATTGCTGTTAGGCATCTTCTAGTGCATTCATAGTTTTTGTGATATCATTGGATCTGGTCCAGTTAATTATTTCCAAAGAAATGAGTTATGGTATGTAACAGCTTCAGTTGCTGGTTAAAAGGAATTATTTATTTGTGCTATATTTTGGTACAATTTTTTGTTTGT

Fln Alignment:

Contig18231___MCGILAALGCIDVSQAKRARILELSRRLRHRGPDWSGISHHGNCFLAHQRLAIVDPTSGNQPLYNEDKTIVVTVNGEIYNHEDLRTKLGSHKFRTRSDCEVIAHLYEAYGEDFVNMLDGMFSFVLLDTRDNSFIAARDAIGITPLYTGWGIDGSIWFASEMKALNDDCERFECFPPGHLYSSKLGGYKRWYNPPWYSEDIPSTPYDPLVLRKAFEQAVIKRLMADVPFXXXXXXXXXXXXXAAVASRYLAGTEVARQWGAKLHTFCIGLQGSPDLKAAREVADYLDSFHHEFNFTVQEGIDAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHRETCQKIKSLHLYDCLRANKSTSAWGVEARVPFLDKEFINISMGIDPEWKMVRPDLGRIEKWILRKAFDDVENPYLPKHILYRQKEQFSDGVGYSWIDGLKEHAANHVTNMMMANAKYIYPENTPTTKEAYYYRMIFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNG-NEEVSADFSIKKPKFLDGGVKVAVEP
D9IXC8_______________MCGILAALGCIDVSQAKRARILELSRRLRHRGPDWSGISHHGNCFLAHQRLAIVDPTSGNQPLYNEDKTIVVTVNGEIYNHEDLRTKLGSHKFRTRSDCEVIAHLYEAYGEDFVNMLDGMFSFVLLDTRDNSFIAARDAIGITPLYTGWGIDGSIWFASEMKALNDECERFECFPPGHLYSSKLGGYKRWYNPPWYSEDIPSTPYDPLVLRKAFEQAVIKRLMADVPFGVLLSGGLDSSLVAAVASRYLAGTEVARQWGAKLHTFCIGLQGSPDLKAAREVADYLDSFHHEFNFTVQEGIDAIEEVIYHIETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEELHRETCQKIKSLHLYDCLRANKSTSAWGVEARVPFLDKEFINISMGIDPEWKMVRPDLGRIEKWILRKAFDDVENPYLPKHILYRQKEQFSDGVGYSWIDGLKEHAANHVTNMMMANAKYIYPENTPTTKEAYYYRMIFERFFPQNAARLTVPGGPSVACSTAKALEWDAAWSRNPDPSGRAALGVHVDAYKENADIGNGNNEEVSADFSIKKPKFLDGGVKVAVEP

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
1154			85	14	0.993533
1400		10		90	1.0
1427		13	86		1.0
1643	10		90		0.90298
2218	16		83		0.994512
2221	66			16	0.988813
2222		66		16	0.988813
2223	40		60		1.0
2225	33		66		0.997452
2226	33		66		0.997452
2227	66	33			0.997452
2229			66	33	0.997452
2363		85		14	0.993533
2520		20		80	0.995493
2658	10			90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain