SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18224

Length: 1286 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I n=5 Tax=Pinaceae RepID=Q07489_PINSY	-	-	98%
FL-Next	tr=Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I; Pinus sylvestris (Scots pine).	-	-	98%
Sma3	Lhca4 protein,Type 4 protein of light-harvesting complex of photosystem I	-	-	-

Source	Gene names
Sma3	Lhca4*1-1;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G47470.1	LHCA4, CAB4 light-harvesting chlorophyll-protein complex I subunit A4 chr3:17493622-17494773 REVERSE LENGTH=251	78%
RefSeq	Arabidopsis thaliana	NP_190331.3	chlorophyll a-b binding protein 4 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002330127.1	light-harvesting complex I protein Lhca4 [Populus trichocarpa]	77%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q07489

Fln msg:

Fln protein: MASVTTQAALGVSCPSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQGK*

Protein Length: 253

Fln nts: ATGGGGAGATAAATGGATAGATGAGCTTCTCCGATTGGATCCCAAGGATCCTATCCTTTCCAAAAGACACGCCAGCCGTTCGATGATGGGTTGGTTAATCGGGGCCGTGGAAGTATCCCGCGATCGCTGCCACACAATTATCTGAAAAATCCAGAGGCACTGGTATTGCAAAGTGAAGAGCAGGGGCTGAAGTAATTGCGGGAGAGAAGAGAAGAGAACAGAA_-_ATGGCGTCGGTCACCACTCAAGCCGCTCTCGGCGTATCGTGCCCGTCCGTCTGCAGGTCGGGATTCCTGACAGGCTCATCCGTCTCTCGCCTGGCGAGACGCGTCCGCCCGGGATCGAATCCCGCGCCCGCCAGATCCTTCAAGGTCGAGGCAAAGGGGGAATGGCTGCCCGGGCTCTCCTCCCCATCCTATCTCAACGGCAGTCTTCCGGGAGATAACGGGTTCGATCCCCTGGGCCTCGCAGAGGATCCGGAGAGCCTGAAATGGTACGTCCAGGCGGAGCTAGTGAACGGGAGATGGGCGATGCTGGGCGTGGCGGGGATGCTTATCCCGGAAGTGCTAACCAGCATTGGCCTGATCAACGTTCCCAAGTGGTACGATGCAGGCAAAGTGGAGTACTTCGCGTCCTCGTCCACGCTGTTTGTGATTGAATTCATTCTGTTTCACTATGTTGAGCTCAGAAGATGGCAGGACATCAAGTACCCCGGGAGTGTGAATCAGGATCCTATTTTCAAGAGTTACAGTCTTCCTCCCAACGAAGTGGGCTATCCTGGTGGCATCTTCAACCCGCTCAACTTCTCCCCATCCATGGAGGCCAAGGAGAAGGAGCTTGCCAATGGGAGGTTGGCAATGTTAGCATTCCTGGGATTTGTAGTGCAACACAATGTAACAGGAAAGGGCCCGTTCGACAACTTGCTGCAACATCTGTCTGATCCATGGCACAACACCATTATTCAAACCTTGCAAGGAAAATAA___GACACTTCCCACTACTGTGTCTTTGAATGTAATCTTTGGGCTTTTGTGTATTTAAACTTATGAGAAGTTCTCTGTCACATCTGGTTTCCAAACTCTTGTGCATACAGAATGGGTAAATGTGTGGAGGTACTTCCACTGCTTATATATATGGATATGATGGATCATGCTGGATATCTATATTATGTTGTTTCTGGTAAAATTTCTGAGACTTTTATTTATTTTGATTTGTCCACTGTTGAACAGAAATGCTAATGCTTTTGCAATTGACTTATAAAAAAAAAAGCCAGTGCTTCTTTTTGCGTGATCG

Fln Alignment:

Contig18224___MASVTTQAALGVSCPSVCRSGFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPIFKSYSLPPNEVGYPGGIFNPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQGK
Q07489_______________MASVTTQAALGVSCPSVCRSAFLTGSSVSRLARRVRPGSNPAPARSFKVEAKGEWLPGLSSPSYLNGSLPGDNGFDPLGLAEDPESLKWYVQAELVNGRWAMLGVAGMLIPEVLTSIGLINVPKWYDAGKVEYFASSSTLFVIEFILFHYVELRRWQDIKYPGSVNQDPLFKQYSLPPNEVGYPGGIFNPLNFSPSMEAKEKELANGRLAMLAFLGFVVQHNVTGKGPFDNLLQHLSDPWHNTIIQTLQGK

SNPs (tot: 15)

Position	A %	C %	G %	T %	Probability
859	4		95		0.995881
867	4			95	0.997218
869	4	95			0.997218
871			95	4	0.997218
897		92		4	0.987114
979	86			1	1.0
987		97		2	0.979771
1075		92		7	0.999664
1117	88	9			1.0
1177		27		72	1.0
1182	14			78	0.999974
1183	14			85	0.999981
1184	14			85	0.999981
1196	87	12			0.992554
1240		20		80	0.995493

SSRs (tot: 1)

Start position	End position	Sequence	Length
203	218	AGAGA AGAGA AGAGA A	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain