SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18216

Length: 2230 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene18216
GGAATCAATTGGAACAACTTTCTGCCATGGACTTTCCGTCCACTATTCTCTTTTGAAAAGCAATTTGAAGGGACCACAAGGTGAGCTTTTTTGTTTATATTTCGTCTCTAGCTGCCTGGGACTTGGAGAGCAAGCCTCAGCCTGCCAAAGGAATTATGGGTGCCTTCAGGATTGTTTATATGTTAGCTGTTATTGCGTTTCTTGGGATTTTATCGAATGTGGATGGTCACAGGGTTTTGAGATCATGCAAGCCTGGTGCTCACCTGAGATCCCTCTCCAAATCCACTTTGGAGGGTCGGGATCCTCCGGTGGGCAAGGTTCCTAAGTATTCCAGTAGGGAGGAGGCCCAGAGAGTTTCGGTTGCTCGCTGGAGGAATGCTGAGGCTCTGGCTACGGCACCCAGATCTGACAACGCTACGGTCCTGTCGGGTGGGCGCTTATTCTATGTTACAGACTATGGCGCGGATCCAACCGGAGCCACGGACAGCACTCAGGCTCTCTTGGAAGCCATCAGCGAGGCCTTCCAGGTAACCACGACCAGGCATACGATGCCAGGTCTGCAAGACCTCGGGGGCGTTGAGATTCATCTCGAAGGAGGAAATTATCGCATTAGCGAACCTCTCCGGCTGCCGGAAAGCGGGGGCGGAAATGTTGTGATTCACGGGGGTACCCTGCGGGCTTCCGAGAATTTCCCGGAGGATCGTTTCTTGATCGAGCTATGGACCTCGACTGATTCGCTACTCAATGGGAGCCTAAACGGTGACGAGCTCGCGGCCGCCACGAAGGACGCTGACTTCTATGCCGCGTCATACGAATACATTACCCTGCGAGATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTAGTCATCAATTCCCTCAGAACCAACATCGACAGCTGTTATATTTCGCATTTCACGTCTTTTGGCATCATGGTTCAGGGTGGGCACGAGACATACATCCGGAATTCCTTTCTTGGGCAGCACATTACCGCTGGCTCGAGCCCCTTAGAGAGGAATTTCAGCGGCGTGGGCATAAGTCTCATGGGCAACGACAACGCTATAACGGATGTCGTCGTTTTCTCGGCTGCTGTGGGGATTTCGGTGAGTGGGCAGGCCAATATAATCACGGGAGTCCACTGTTATAACAAGGCCACGGCCTTCGGAGGAATTGGGATCAGACTACTGCTGGGCGGATTGACTCAGACTAGGATTCTGGGCGCTTATATGGACTATACGGGCATTGTTGCAGAGGATCCCGTACAGCTTGATATTGCCAATGGTTTCTTTCTGGGCGACGCCAACGTAGTGCTGAAATCGTCTCAAAGGAAAATGATATCAGGTGTCAACATTGTCGATAATATGTTTACTGGCTCTGGGAAAGGCGTGGAAATCGTTCAGTTGGAAGGACAATTTGAATCGATTGATCAGACAATTGTTGACAGGAACAATGTGCTTGGGATGACCCTTAAATCAACCGTGGCTCGAGGCACGGTCCAGGGCAACGGAAGCACTTGGACCATAGATTTTAATCCCGTCCTGCTCTTCCCAAACCTCATTCAACATGTTCAATATTCCTTCTATGCTTCTGATGCCTCATTTCCTAGGCATGCTCTCAGAAATGTCTCTGAAAACAAAGTGGTGATCGAAGCGGATACCGAAGTATCTGCAACGGTGTCTGTACAGGTAGATCAGAGTGCCACTTTTGTTCATGGCAGTAAGATTTATTCCTAAGAGACAGGGGTCTCTGGATTACTACATACAGATTTTCCCAGATATTGTTAGTTGCAGGGCAATTATGTACAGGGAAACCCCAAGGTTCTTGTTGCCTTTCTTTCTTCACTTTTGCGGCCATTCTGAATTTTATGTTATGTATTGCTTTGTTCAAAGCCAAATTTCTGAAAACGGCAACTTAATGGAATTCCGTTTAAAGGGCTTTCGAACGGGACCTTATTAGTGGTGATTATTTTCCAATAAGGTTATAGATTATAGCTGCTGAAAACCTTGGCATCGTTCTGATGAGAACCGGAGAAGACGGTGTTCTGTTCATTTTTTTCTGGGATTAATTAATTCAGGCCCAGGCCCAGGGCCAGGCCCACTCCCTAGTTTTTTTTTTATGGTAAGAAAAATGATGAATAATGAAGGTTACTGAAAACGATGGGAACATATACATAAAACCCACTTTAGGCATCTTCGTTTGATGTCTCTTTTTGATGGGAAAAAAA

Ace file of the UniGene sp_v3.0_unigene18216 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polygalacturonase QRT3 [Arabidopsis thaliana] ref\|NP_001078410.1\| Polygalacturonase QRT3 [Arabidopsis thaliana] sp\|O49432.1\|QRT3_ARATH RecName: Full=Polygalacturonase QRT3; Short=AtQRT3; Short=PG QRT3; AltName: Full=Pectinase QRT3; AltName: Full=Protein Q	-	-	0.0	54%
FL-Next	sp=Polygalacturonase QRT3; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	57%

Source	Gene names
Sma3	AT4g20040; At4g20040; At4g20050; F18F4.150; GSVIVT00029641001; GSVIVT00030119001; OSJNBa0070C17.16; Os04g0613200; OsI_17366; OsJ_16135; PHYPADRAFT_198113; PHYPADRAFT_227125; POPTRDRAFT_414958; POPTRDRAFT_553848; POPTRDRAFT_588705; POPTRDRAFT_676368; POPTR

Source	GOs	Term	Type	e value	Identity
Sma3	polygalacturonase activity	GO:0004650	Molecular Function	0.0	-
Sma3	microsporogenesis	GO:0009556	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Parallel beta-helix repeat	IPR006626	-	0.0	-
Sma3	Pectin lyase fold	IPR012334	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G20050.1	QRT3 Pectin lyase-like superfamily protein chr4:10849911-10852090 REVERSE LENGTH=481	57%
RefSeq	Arabidopsis thaliana	NP_001078410.1	Polygalacturonase QRT3 [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002303344.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: O49432

Fln msg: your sequence is longer than subject: 528 - 481

Fln protein: MGAFRIVYMLAVIAFLGILSNVDGHRVLRSCKPGAHLRSLSKSTLEGRDPPVGKVPKYSSREEAQRVSVARWRNAEALATAPRSDNATVLSGGRLFYVTDYGADPTGATDSTQALLEAISEAFQVTTTRHTMPGLQDLGGVEIHLEGGNYRISEPLRLPESGGGNVVIHGGTLRASENFPEDRFLIELWTSTDSLLNGSLNGDELAAATKDADFYAASYEYITLRDLMLDANFRGGGILVINSLRTNIDSCYISHFTSFGIMVQGGHETYIRNSFLGQHITAGSSPLERNFSGVGISLMGNDNAITDVVVFSAAVGISVSGQANIITGVHCYNKATAFGGIGIRLLLGGLTQTRILGAYMDYTGIVAEDPVQLDIANGFFLGDANVVLKSSQRKMISGVNIVDNMFTGSGKGVEIVQLEGQFESIDQTIVDRNNVLGMTLKSTVARGTVQGNGSTWTIDFNPVLLFPNLIQHVQYSFYASDASFPRHALRNVSENKVVIEADTEVSATVSVQVDQSATFVHGSKIYS*

Protein Length: 529

Fln nts: GGAATCAATTGGAACAACTTTCTGCCATGGACTTTCCGTCCACTATTCTCTTTTGAAAAGCAATTTGAAGGGACCACAAGGTGAGCTTTTTTGTTTATATTTCGTCTCTAGCTGCCTGGGACTTGGAGAGCAAGCCTCAGCCTGCCAAAGGAATT_-_ATGGGTGCCTTCAGGATTGTTTATATGTTAGCTGTTATTGCGTTTCTTGGGATTTTATCGAATGTGGATGGTCACAGGGTTTTGAGATCATGCAAGCCTGGTGCTCACCTGAGATCCCTCTCCAAATCCACTTTGGAGGGTCGGGATCCTCCGGTGGGCAAGGTTCCTAAGTATTCCAGTAGGGAGGAGGCCCAGAGAGTTTCGGTTGCTCGCTGGAGGAATGCTGAGGCTCTGGCTACGGCACCCAGATCTGACAACGCTACGGTCCTGTCGGGTGGGCGCTTATTCTATGTTACAGACTATGGCGCGGATCCAACCGGAGCCACGGACAGCACTCAGGCTCTCTTGGAAGCCATCAGCGAGGCCTTCCAGGTAACCACGACCAGGCATACGATGCCAGGTCTGCAAGACCTCGGGGGCGTTGAGATTCATCTCGAAGGAGGAAATTATCGCATTAGCGAACCTCTCCGGCTGCCGGAAAGCGGGGGCGGAAATGTTGTGATTCACGGGGGTACCCTGCGGGCTTCCGAGAATTTCCCGGAGGATCGTTTCTTGATCGAGCTATGGACCTCGACTGATTCGCTACTCAATGGGAGCCTAAACGGTGACGAGCTCGCGGCCGCCACGAAGGACGCTGACTTCTATGCCGCGTCATACGAATACATTACCCTGCGAGATTTGATGTTGGATGCAAATTTTCGAGGCGGGGGAATTCTAGTCATCAATTCCCTCAGAACCAACATCGACAGCTGTTATATTTCGCATTTCACGTCTTTTGGCATCATGGTTCAGGGTGGGCACGAGACATACATCCGGAATTCCTTTCTTGGGCAGCACATTACCGCTGGCTCGAGCCCCTTAGAGAGGAATTTCAGCGGCGTGGGCATAAGTCTCATGGGCAACGACAACGCTATAACGGATGTCGTCGTTTTCTCGGCTGCTGTGGGGATTTCGGTGAGTGGGCAGGCCAATATAATCACGGGAGTCCACTGTTATAACAAGGCCACGGCCTTCGGAGGAATTGGGATCAGACTACTGCTGGGCGGATTGACTCAGACTAGGATTCTGGGCGCTTATATGGACTATACGGGCATTGTTGCAGAGGATCCCGTACAGCTTGATATTGCCAATGGTTTCTTTCTGGGCGACGCCAACGTAGTGCTGAAATCGTCTCAAAGGAAAATGATATCAGGTGTCAACATTGTCGATAATATGTTTACTGGCTCTGGGAAAGGCGTGGAAATCGTTCAGTTGGAAGGACAATTTGAATCGATTGATCAGACAATTGTTGACAGGAACAATGTGCTTGGGATGACCCTTAAATCAACCGTGGCTCGAGGCACGGTCCAGGGCAACGGAAGCACTTGGACCATAGATTTTAATCCCGTCCTGCTCTTCCCAAACCTCATTCAACATGTTCAATATTCCTTCTATGCTTCTGATGCCTCATTTCCTAGGCATGCTCTCAGAAATGTCTCTGAAAACAAAGTGGTGATCGAAGCGGATACCGAAGTATCTGCAACGGTGTCTGTACAGGTAGATCAGAGTGCCACTTTTGTTCATGGCAGTAAGATTTATTCCTAA___GAGACAGGGGTCTCTGGATTACTACATACAGATTTTCCCAGATATTGTTAGTTGCAGGGCAATTATGTACAGGGAAACCCCAAGGTTCTTGTTGCCTTTCTTTCTTCACTTTTGCGGCCATTCTGAATTTTATGTTATGTATTGCTTTGTTCAAAGCCAAATTTCTGAAAACGGCAACTTAATGGAATTCCGTTTAAAGGGCTTTCGAACGGGACCTTATTAGTGGTGATTATTTTCCAATAAGGTTATAGATTATAGCTGCTGAAAACCTTGGCATCGTTCTGATGAGAACCGGAGAAGACGGTGTTCTGTTCATTTTTTTCTGGGATTAATTAATTCAGGCCCAGGCCCAGGGCCAGGCCCACTCCCTAGTTTTTTTTTTATGGTAAGAAAAATGATGAATAATGAAGGTTACTGAAAACGATGGGAACATATACATAAAACCCACTTTAGGCATCTTCGTTTGATGTCTCTTTTTGATGGGAAAAAAA

Fln Alignment:

Contig18216___EAQRVSVARWRNAEALATAPRSDNATVLSGGRLFYVTDYGADPTGATDSTQALLEAISEAFQVTTTRHTMPGLQDLGGVEIHLEGGNYRISEPLRLPESGGGNVVIHGGTLRASENFPEDRFLIELWTSTDSLLNGSLNGDELXXXXXXXXXXXASYEYITLRDLMLDANFRGGGILVINSLRTNIDSCYISHF-TSFGIMVQGGHETYIRNSFLGQHITAGSSPLERNFSGVGISLMGNDNAITDVVVFSAAVGISVSGQANIITGVHCYNKATAFXXXXXXXXXXXXXXXXXXGAYMDYTGIVAEDPVQLDIANGFFLGDANVVLKSSQRKMISGVNIVDNMFTGSGKGVEIVQLEGQ---FESIDQTIVDRNNVLGMTLKSTVARGTVQGNGSTWTIDFNPVLLFPNLIQHVQYSFYASDAS-FPRHALRNVSENKVVIEADTEVSATVSVQVDQ
O49432_______________QALKASLVR-RNLPALVSPPPTPPQAV-PGPRVYQVISYGADPTGKLDSTDAILKAMEEAFDGPNHGVLMQGINDLGGARIDLQGGSYLISRPLRFPSAGAGNLLISGGTLRASNDFPVDRYLIELKDESSKL--------------------QYIFEYITLRDLLIDCNYRGGAIAVINSLRTSIDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVTDTVIFSARIGVMVSGQANLLSGVHCYNKATGFGGTGIYLRLPGLTQNRIVNSYLDYTGIVAEDPVQLQISGTFFLGDAFILLKSI-AGYIRGVSIVDNMFSGSGHGVQIVQLDQRNTAFDDVGQVVVDRNSVNGMVEKSTVARGSVDGNGTSWTVDFNPVLLFPDLINHVQYTLVASEAGVFPLHALRNVSDNRVVVETNAPVTGTVYVTVNQ

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
169	33		66		0.997452
178	33		66		0.997452
179	66		33		0.997452
183	20		80		0.995493
210	20		80		0.995493
234		77	22		0.999999
249			88	11	0.923564
275	87			12	0.992554
314			83	16	0.994512
327	16		83		0.994512
369	16		83		0.994512
388	20		80		0.995493
429	75		25		0.996473
432	25		75		0.996473
434		66	33		0.997452
1869	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain