SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18166

Length: 1562 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18166

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA	-	-	6.0e-23	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	53%
Sma3	Putative histone H1	-	-	8.781e-09	-

Source	Gene names
Sma3	MICPUCDRAFT_64409; MICPUN_113606; h1;

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G18050.1	HIS1-3 histone H1-3 chr2:7846095-7846670 FORWARD LENGTH=167	1.0e-17	47%
RefSeq	Arabidopsis thaliana	NP_179396.1	histone H1-3 [Arabidopsis thaliana]	1.0e-17	47%
RefSeq	Populus trichocarpa	XP_002327673.1	histone H1 [Populus trichocarpa]	3.0e-20	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV40

Fln msg: your sequence is longer than subject: 293 - 239

Fln protein: MAVTANVSRKSGRVAAKEASKPRESKQQPKLKKTMSVDAKSEKKKKQPAASGSQRAHPPYFQMAVEAIATLRERNGSSRRAIAKYIEAHYKSDLPSNFKKLLTNQLRILSEKGKLVQVKRSFKLTEELKKSSQVKAIKAATKPPAASSGKPVDAKKPKPAEPAQAKKQTVSAKSPKPKAAEKPKAKAAVKPKAKAVSEKKSAPPPAPAPAPAPAPAPPVSTPKVQKTASLVSVKKEKPSSSKAAKSKPVKTSTLAKSTPAPRKSPRGAPPAAASKKPITSPPPKKKKKTAKN*

Protein Length: 294

Fln nts: ATGGGGACCGATAAAATTATTAAGATAAGCGTCGTGACCTTGGCTGTCACTCAAGGGTTTTAAGTTTAAAAGAGGAGGGTTTAAGTTCAAATCACAACACGCAACTTCGAACTTATCCCCCCTCTACAGAAGCCAGTTGGAGTTTAACTGAGAGCGCGGGTTCTGTAAAATCGTCA_-_ATGGCGGTCACTGCAAATGTTTCAAGGAAGAGCGGCAGGGTAGCTGCGAAAGAGGCCTCTAAGCCCAGAGAAAGCAAGCAGCAGCCGAAACTCAAGAAAACAATGTCGGTTGATGCGAAATCCGAGAAGAAGAAGAAGCAACCAGCAGCTTCCGGTTCGCAGCGCGCTCACCCTCCATACTTTCAGATGGCCGTGGAGGCCATTGCTACTCTGAGAGAGCGCAACGGTTCAAGTCGCCGGGCCATTGCGAAGTACATTGAAGCGCACTACAAGAGCGACCTGCCATCCAATTTCAAGAAGCTGTTGACTAACCAGCTGAGAATTCTGTCTGAAAAGGGCAAGCTTGTGCAAGTCAAGCGCTCTTTTAAGCTCACTGAGGAGCTCAAGAAGTCTTCCCAGGTGAAGGCCATCAAGGCCGCCACTAAACCGCCTGCTGCTTCTTCAGGGAAGCCAGTTGACGCGAAGAAGCCCAAGCCCGCAGAGCCAGCCCAGGCTAAGAAGCAGACCGTTTCCGCAAAATCTCCCAAGCCCAAAGCGGCGGAAAAACCGAAGGCAAAGGCCGCTGTTAAGCCGAAGGCAAAAGCTGTTTCCGAAAAGAAATCGGCCCCCCCTCCGGCCCCGGCTCCGGCTCCGGCTCCGGCCCCGGCTCCTCCGGTTTCTACCCCAAAGGTTCAGAAGACCGCTTCCCTCGTTTCAGTAAAGAAAGAGAAACCCTCGTCCTCAAAGGCGGCCAAGTCGAAACCGGTCAAGACATCGACTCTTGCCAAGTCCACTCCTGCACCGAGAAAATCTCCGAGAGGTGCTCCCCCTGCTGCTGCTTCCAAGAAGCCTATCACCAGCCCCCCTCCGAAGAAGAAGAAGAAGACCGCCAAAAATTGA___AGCGGGAAAAACCAGAAGGCGAAGAAAGCCGTTTCGGGGATTTTGTATCGTGAGAGAACAACGCTGTTTTGTGTGGAGTCAGGCGGCAGAAAATGATGATGAACACAGATAGCTGATATGAAGCAATGGAGAAGGAAGAGAAAGGGGCTTAATTGAATCTGTACCATTTTCAGAGAAATGAATTTTCAGTAGTAGTCGTTGTTACTGTCACAGTGAGTTCTTCGTATTCATAATTTCTTTCATTTGTTGTTATTGTTTGCTAAGTACATTTTTATACCTTAAACAATTAAGATTCATTGCCATACTATTCGGATCTCTTATGGTTCTTTATATAATGAATGAGATTTCGTACTGTCCATCTAATGGGTTAATGGTTGTTTGTACCTTCCGTCTGGTTATGATGTTAATGGGCTTTTTGTATCCTCTCTGTCTTTTGTATTCATCCTATTATGATGATAACTGTTATCAGTTTGAAATACCCATATCATTTTCAGATTGAAAATGACG

Fln Alignment:

Contig18166___PRESKQQPKLKKTMSVDAKSEKKKKQPAASGSQR--AHPPYFQMAVEAIATLRERNGSSRRAIAKYIEAHYKSDLPSNFKKLLTNQLRILSEKGKLVQVKRSFKLTEELKK
A9NV40_______________PKTTEEKP-VKAPKEKKAKTPKEKKPKAAKGSKPPPAHPPYFQMISEAITALKERGGSSPYAIAKFMSEKYKSDLPPVFKKKLTVQLRNLTNSGKLTKVKGSYKLAEKEKK

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
406		25		75	0.996473
456		91		8	0.999807
563	95		4		0.997218
872	25	25			0.995533
873		75		25	0.996473
939		20		80	0.995493
979		16		83	0.994512
1009		16		83	0.994512
1038	66		33		0.997452
1050	66			33	0.997452
1074	83		16		0.994512
1100	11			88	0.923564
1102			11	88	0.923564
1104			11	88	0.923564
1113	88		11		0.923564
1417		12		87	0.992554

SSRs (tot: 3)

Start position	End position	Sequence	Length
301	314	AGA AGA AGA AGA AG	14
795	817	CCGGCT CCGGCT CCGGCT CCGGC	23
1025	1041	GAA GAA GAA GAA GAA GA	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain