SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18162

Length: 1004 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18162 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	mate efflux domain-containing protein [Arabidopsis thaliana] emb\|CAA66809.1\| hypothetical protein [Arabidopsis thaliana] dbj\|BAB01841.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAL15295.1\| AT3g26590/MFE16_11 [Arabidopsis thaliana] gb\|AAN73299.1\|	-	-	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	83%
Sma3	Multidrug resistance pump, putative	-	-	-

Source	Gene names
Sma3	117M18_21; 117M18_23; AT4G21910; AT4g00350; AT4g21910; AT4g25640; A_IG005I10.20; At1g11670; At1g12950; At1g33080; At1g33090; At1g33100; At1g33110; At1g47530; At1g61890; At3g21690; At3g26590; At3g59030; At4g00350; At4g21910; At4g25640; At5g10420; At5g38030

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-
Sma3	response to nematode	GO:0009624	Biological Process	-
Sma3	proanthocyanidin biosynthetic process	GO:0010023	Biological Process	-
Sma3	maintenance of seed dormancy	GO:0010231	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Peptidase M1, alanyl aminopeptidase	IPR012779	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3		IPR015521	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Proteinase inhibitor I25, cystatin, conserved site	IPR018073	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G26590.1	MATE efflux family protein chr3:9761927-9765259 REVERSE LENGTH=500	62%
RefSeq	Arabidopsis thaliana	NP_189291.1	mate efflux domain-containing protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002311767.1	predicted protein, partial [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKL5

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 139 aas, your sequence is shorter than subject: 264 - 500

Fln protein: APHLSNFPDDRPPITGCRSFAHGWWEESKKLWYLAGPAIFTSICQYSLGAITQTFTGHIGDLELAAVSIENSVIAGLSYGIMLGMGSALETLCGQSVGAGRLDMLGLYMQRSWIILLCIACFLSLLYVFATPLLLLIGQEKEIAELAGTFALWMLPQVFAYSMVFPLAKFLQAQSKVMVMATIAGCALAVHVLLSWILIFKVGWGLPAAALVLDLSWWIIVVAQMGYVFSGACRDAWTGFSWSAFSNLGGFVRLSLASGVMLW*

Protein Length: 265

Fln nts: GCACCCCATCTTTCTAATTTTCCCGACGATCGTCCGCCCATTACAGGCTGCAGGAGCTTTGCTCATGGATGGTGGGAGGAGTCCAAGAAGCTCTGGTATCTTGCGGGTCCTGCTATTTTTACTTCAATCTGCCAGTACTCGCTGGGGGCAATCACGCAGACCTTCACTGGGCATATAGGCGATCTGGAACTGGCGGCGGTGTCCATTGAGAATTCAGTCATTGCTGGGCTTTCATATGGGATCATGCTGGGGATGGGGAGTGCACTCGAAACGCTCTGCGGGCAATCCGTGGGAGCGGGAAGACTTGATATGCTGGGATTGTATATGCAGCGCTCCTGGATTATTCTCCTCTGCATTGCCTGCTTTCTGAGTTTGCTCTATGTCTTCGCCACGCCTCTCTTGCTGTTGATTGGGCAAGAGAAGGAAATAGCAGAGCTGGCGGGCACATTTGCTCTGTGGATGCTCCCCCAGGTCTTCGCTTACTCCATGGTTTTCCCGCTAGCCAAGTTCCTGCAGGCGCAGAGCAAAGTGATGGTGATGGCAACCATCGCTGGGTGTGCGTTGGCGGTGCACGTGTTGCTGAGCTGGATCTTGATATTCAAGGTGGGATGGGGTCTGCCTGCAGCTGCGCTGGTGCTGGATCTGTCGTGGTGGATCATCGTGGTGGCTCAGATGGGCTACGTGTTCAGCGGTGCTTGCAGAGACGCGTGGACGGGGTTTTCCTGGTCGGCGTTTAGCAACTTGGGTGGCTTTGTGCGCCTCTCTTTGGCCTCTGGTGTGATGCTCTGGTAAGTTACCTTGTCTTAAATTTGCAGTCATTAAGTTAATTCTGCAATGAATTCCACAATGCCACTTATGGGTTTCACATGTAATAATTCTGCAATGAATTCCACAATCCCACTGATGGATTTCACATGTGATACCGCCCTTGGATATCAGTCAAATGCTTTTCTTGCAACATCATGTATTTATTTTGTTATAAAGTGTGCTGGTGTATTGGATAA

Fln Alignment:

Contig18162___PHLSNFPDDRPPITGCRSFAHGWWEESKKLWYLAGPAIFTSICQYSLGAITQTFTGHIGDLELAAVSIENSVIAGLSYGIMLGMGSALETLCGQSVGAGRLDMLGLYMQRSWIILLCIACFLSLLYVFATPLLLLIGQEKEIAELAGTFALWMLPQVFAYSMVFPLAKFLQAQSKVMVMATIAGCALAVHVLLSWILIFKVGWGLPAAALVLDLSWWIIVVAQMGYVFSGACRDAWTGFSWSAFSNLGGFVRLSLASGVML
B8LKL5_______________PHRYDFPDDRRPITDCRSLANGCWEESKKLWYLSGPAIFTSVCQYSLGALTQTFAGHIGELELAAVSIENSVIAGLSFGIMMGMGSALETLCGQSVGARRLDLLGLYMQRSWIILLSTALIMSLIYIFATPILVLIGQQKDIADMAGKFAVWMLPQLFAYAMNFPLAKFLQAQSKVMVMSIIAGCALVVHVLLSWILIFKVGWGLPAAALVLNLSWWIIVLAQIGYVFSGACRDAWAGFSWSAFSNLGAFVRLSLASGVML

SNPs (tot: 3)

Position	C %	T %	Probability
461	33	66	0.997452
483	66	33	0.997452
635	10	90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain