SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18132

Length: 1872 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene18132 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	major facilitator protein [Arabidopsis thaliana] gb\|AAF03444.1\|AC010797_20 unknown protein [Arabidopsis thaliana] gb\|AAF14842.1\|AC011664_24 unknown protein [Arabidopsis thaliana] gb\|AAM91600.1\| unknown protein [Arabidopsis thaliana] gb\|AAN15407.1\| unknown	-	-	0.0	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	40%
Sma3	Nodulin-like protein	-	-	1.479e-11	-

Source	Gene names
Sma3	AT.I.24-7; AT4G34950; At1g74780; At3g01930; At5g14120; At5g50520; At5g50630; F1C9.29; F28J7.26; GSVIVT00017962001; GSVIVT00037868001; GSVIVT00037871001; LOC_Os12g44060; OSIGBa0096P03.3; Os04g0388700; Os08g0532400; Os12g0637700; OsI_15661; OsI_30023; OsJ_1

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	heat shock protein binding	GO:0031072	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Nodulin-like	IPR010658	-	-
Sma3	Major facilitator superfamily	IPR011701	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G01930.2	Major facilitator superfamily protein chr3:319289-321488 REVERSE LENGTH=584	52%
RefSeq	Arabidopsis thaliana	NP_850497.1	major facilitator protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002318735.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRH5

Fln msg: your sequence is shorter than subject: 512 - 626

Fln protein: AGGIWTLPSAGAWNEICVLIFVGTNGETYFNTAALVSCVRTFPRSRGPTVGILKGFTGLSGAIFTQIYATIYAPDQAAFIFMVAVGPFMVAVAMMFILRPLAVVRRDQINPASDTDNFNFIYGVCLLLAAYLMVVMLLQDLIHVNRTLTSIFTLGLLIILLLPFALPVISTFFPWWMTRALSVNKDGTDQLQAGFLEDHLGQLPEKVPYTDYQYIERQDSVDVLVQDQKSQGLDLLNEYERQRLYNQLESRWFHAAAGGAVSIKRIRRAPRRGEDFTLMQALMKADFWLLFFALSCGGGSGLTIIDNLGQMSESLGYANSHIFVSMISIWNFLGRIGGGFLSEIVARDYAYPRPVTVAAAQVIMAIGQLVFATSWPGCLYGGTLLVGLGYGALWSIVPATASELFGLKHFGSLYNFITMANPTGSLIFSGLIAGSIYDWEAEKQQLSRYPSHSLMAKGAYNHSSKCEGAECFFLTYLLMVGVCIIGVILSLVLSYRTKIVYSTMYGSDHGT*

Protein Length: 513

Fln nts: CTGCTGGAGGCATATGGACGCTCCCCTCGGCAGGCGCCTGGAACGAGATTTGTGTATTGATCTTTGTTGGAACTAATGGAGAGACGTACTTCAATACTGCTGCTCTGGTTTCCTGTGTGCGCACCTTCCCCAGAAGCAGGGGACCTACTGTTGGGATTCTCAAAGGATTCACAGGTCTGAGTGGTGCCATTTTCACTCAGATATATGCCACCATCTATGCTCCTGATCAAGCGGCCTTCATCTTTATGGTGGCTGTTGGTCCTTTTATGGTGGCAGTTGCCATGATGTTTATACTCAGGCCTCTTGCTGTAGTCAGGAGAGATCAAATCAATCCAGCAAGTGATACTGACAATTTCAATTTCATTTATGGGGTTTGTTTATTACTAGCAGCATATCTGATGGTTGTTATGCTCCTCCAAGACCTCATCCATGTTAATCGTACACTAACTTCAATATTCACTCTTGGATTGCTCATCATTCTCCTTCTCCCTTTTGCCTTACCAGTCATCTCCACCTTTTTCCCATGGTGGATGACCCGGGCCCTCAGTGTTAACAAGGATGGCACTGATCAATTGCAAGCTGGATTCTTGGAGGATCATCTAGGGCAGCTGCCAGAGAAGGTACCCTATACAGATTATCAGTATATTGAGAGACAAGATAGCGTTGATGTACTGGTGCAGGACCAAAAATCCCAAGGGTTGGATCTGCTGAATGAGTATGAGAGGCAGAGACTTTATAATCAACTGGAGTCCCGCTGGTTTCATGCTGCTGCTGGAGGAGCTGTAAGCATAAAGAGGATTAGGAGAGCCCCACGGAGAGGAGAGGATTTTACTTTGATGCAGGCATTGATGAAAGCTGATTTTTGGCTTCTGTTCTTTGCACTTAGCTGTGGAGGTGGTTCAGGATTGACCATCATTGATAATTTGGGACAGATGAGTGAGTCCTTGGGCTATGCCAATTCTCATATATTTGTATCCATGATCAGTATCTGGAACTTCCTTGGGCGTATTGGTGGTGGATTTTTGTCGGAAATTGTGGCAAGGGACTATGCATACCCGAGACCTGTTACAGTGGCTGCAGCACAGGTCATTATGGCAATTGGACAGCTCGTTTTTGCAACATCTTGGCCTGGATGTTTATATGGGGGGACTTTACTGGTGGGGTTAGGGTATGGCGCGCTCTGGTCCATTGTTCCAGCAACTGCTTCTGAACTCTTTGGCTTGAAACACTTCGGCTCTTTATACAATTTTATCACCATGGCCAATCCCACAGGATCTCTAATTTTCTCAGGTCTTATTGCTGGTTCTATCTACGATTGGGAAGCAGAGAAACAGCAATTGTCTCGGTACCCTTCGCACAGTTTAATGGCTAAAGGAGCTTACAATCACTCCTCCAAATGCGAGGGTGCAGAGTGTTTTTTTCTCACTTATTTGCTAATGGTTGGCGTCTGTATTATTGGGGTAATTTTGAGTCTGGTTCTTAGTTATCGGACCAAAATTGTTTACAGTACTATGTATGGTTCAGACCATGGTACTTAG___TTATCAGACCAAAATTGTTTACAGTACTATGTATGGTTCAGACCATCATGAGTCGGATGAGCACATCCGAAAAAGTGAGCATGGCCGGATAATTGCTTGTTGCAGTGACTCCACGTCTAGATTTTCCAGAAGTGGGTAATGTTTTCTATTCTGAATGAGGGCTTGTTGCCGGACGGAGAAATATCCAGTATCTGTGTTCATGATTTTTCTGTAGAAGACAGGCTGAATTTCTCGATGTCCATTGTGATGTCAAATTTTATATTAGTAATTCATGTATTCTATTGTATGGATCTGGAAAACAACGGAATACAACGCGTTCCTGATGTTTTAGCAC

Fln Alignment:

Contig18132___EICVLIFVGTNGETYFNTAALVSCVRTFPRSRGPTVGILKGFTGLSGAIFTQIYATIYAPDQAAFIFMVAVGPFMVAVAMMFILRPL--AVVRRDQINPASDTDNFNFI
B8LRH5_______________QMCIFLCMGGNSTTWMNTAVLVTCMRNFRRNRGPVVGILKGYIGLSTAIFTDLCSALFASSPSSFVLMLTLIPGIVCVTSMIFLRPVPCSADEREEKEEAQSFSTFNVI

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1416	90		10		0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain