SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18129

Length: 1100 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18129

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	PSI reaction center subunit II n=2 Tax=Citrus sinensis RepID=A8C172_CITSI	-	-	92%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	photosystem I reaction center	GO:0009538	Cellular Component	0.0	-
Sma3	photosynthesis	GO:0015979	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Photosystem I PsaD	IPR003685	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G03130.1	PSAD-2 photosystem I subunit D-2 chr1:753528-754142 REVERSE LENGTH=204	91%
RefSeq	Arabidopsis thaliana	NP_171812.1	photosystem I reaction center subunit II-2 [Arabidopsis thaliana]	91%
RefSeq	Populus trichocarpa	XP_002315779.1	hypothetical protein POPTRDRAFT_566261 [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NL03

Fln msg:

Fln protein: MAMALQSAAASAAMVAAAAPPPTVAAASANSVGSSPSAVSFAPWKSSSFFGQRLHPAAAASVHSPHKAGSGSAVVMAASSSTETETEAPAGFTPPELKPETPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKANPGRKGVGQNMRSIGKNVNPIDVKFTGKQTYDV*

Protein Length: 235

Fln nts: ATGGGGATGGTTGTGTGAGAAGTCTAATCTTCTCGAGATCCAAACTCATCTTCATATCCATCTCCTGCGCGCAAACAGAAGAGAAGCACGCACTAACCAGTCGGGCAA_-_ATGGCAATGGCACTGCAATCCGCCGCCGCCTCGGCCGCCATGGTGGCCGCAGCTGCGCCGCCACCCACCGTCGCAGCCGCGTCCGCGAACTCCGTTGGCAGTTCCCCGTCCGCCGTCAGCTTCGCCCCATGGAAATCTTCATCATTCTTCGGCCAGAGGCTCCACCCGGCCGCCGCCGCGTCCGTTCACAGCCCACACAAGGCCGGCAGCGGCTCCGCCGTGGTAATGGCGGCGTCCTCGTCAACGGAGACTGAGACCGAGGCCCCCGCGGGGTTCACTCCGCCGGAGTTGAAGCCGGAGACGCCGTCCCCCATTTTCGGCGGCAGCACCGGCGGTCTCCTCCGGAAGGCGCAGGTGGAGGAATTTTACGTGATAACGTGGGAGTCTCCGAAGGAGCAGATCTTCGAGATGCCGACGGGCGGGGCGGCGATCATGCGGGAGGGGCCGAACCTTCTGAAGCTGGCGAGGAAGGAGCAGTGCCTGGCTCTGGGCACCAGGCTGCGCTCCAAATACAAGATAAATTACCAGTTCTACCGCGTTTTTCCCAACGGGGAAGTCCAGTACCTGCACCCCAAGGATGGGGTGTACCCGGAGAAGGCGAACCCTGGTCGCAAGGGCGTGGGCCAAAACATGCGCTCCATCGGCAAGAATGTGAACCCCATTGATGTTAAGTTCACTGGCAAACAAACCTACGACGTCTAG___AAACAACAACACCACCAGTACTATTCTGCTGTATTTCACAACTCTCTCTGCTTTCCTCTGATTTATTTTCATGTCAAACTATGACAAGCATTAGGAATGTTACAAATGCAATCAATTACTGTTGTTATTGTTATCTATTTGTGTATATCACATTAATTTCAAGGAATGCTTTTTAAATATTTGGTGCAAAGCATTTTGTTGTGAACCTTGCTTTCTATTTGTAATCTTTTTCAAAGGGTGTATATTAATAGTTTTATTGAAGGGAGAAGTTTATTTTATGAGTTAGAAAA

Fln Alignment:

Contig18129___PWKSSSFFGQRLHPXXXXSVHSPHKXXXXXXXXXXXXXXXXXXXXX--PAGFTPPELKPETPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKINYQFYRVFPNGEVQYLHPKDGVYPEKANPGRKGVGQNMRSIGKNVNPIDVKFTGKQTYDV
A9NL03_______________PWKSSSFLGQRLHSAPA-ALQNPHKAAGAALVMAASSSSPATETEKEAPVGFTPPELKPDTPSPIFGGSTGGLLRKAQVEEFYVITWESPKEQIFEMPTGGAAIMREGPNLLKLARKEQCLALGTRLRSKYKIKYQFYRVFPNGEVQYLHPKDGVYPEKVNPGRKGVGVNFRSIGKNVNPSQVKFTGKQTYDV

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
669	15		85		1.0
933		11		88	0.999952
982	12	75		12	0.975346
983	20			80	0.995493
984	20			80	0.995493
985		25		75	0.996473
1071		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain