SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18122

Length: 1908 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18122

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Zinc finger-homeodomain protein 2 n=1 Tax=Saruma henryi RepID=B0LK13_SARHE	-	-	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	0.0	-
Sma3		GO:0045449	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Homeodomain, ZF-HD class	IPR006455	-	-
Sma3		IPR012287	-	-
Sma3	ZF-HD homeobox protein, Cys/His-rich dimerisation domain	IPR006456	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002328807.1	predicted protein [Populus trichocarpa]	0.0	50%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NQC4

Fln msg:

Fln protein: MDLGGQHGAAGGQIPMPMPMSTGSFIHESAASHLINNVNAGHIEEEQQIKSKKTVRYRECMKNHAAAMGGNATDGCGEFMPSGEEGTLEALKCSACDCHRNFHRREVEGEPSCDCNFRIRDQLNRKRSGVLVSSRAVPGTAAAAGPPDPFAFPSNNLLPRLPSQAIMSYSTGPSESDELEGTFLSRPAILKKRFRTKFTQEQKDRMLDFAEKVGWRIQKHDEQAVQQFCQDIGVKRRVLKVWMHNNKNTLGKKE*

Protein Length: 256

Fln nts: TACATGGGGGAGAGAGAAAGGATCGAAAGGCATTTTTCAAAGGGCAAGAAATGGTGGTGGTGTAAACGCTGGACCCGTCCTCGTGGTGTGGTGCGGCTGCTTCTGACTCTTTACTGTCGTTGTCTCAGACTGTCTCTGCCTCTGCCTGTGCTCGCGTCAGCTGATGGAGGATAGTGCAAGCAAAGAAAGGCCAAGGTGAAGAAGCACTATGGATCAGCAAAATGCTTGTCTGCCTATTTTTCTACACCTACTTTTCCATTGAGGAAGTTGAGGTTGAGGAAAATTTTTCTGCTGTGTTGTCGGTGCCAAAGTTCTACTATGTAGAGTTTGAGTTTGAGTTTGAGGGTTACTGTGCTTCTATAATCTGCAGGCAGGCAAGTATTTTGCTTAGGTTTTCTGTGATTGATGTATAGTCTTTTGCAATATTTCCAACCCACAGGGAAGTAGTTCCAACATTCCACAGGGAAGCAGCAGAGCTTAATTGTATAATTTTCTTTTTCAACTGAAGAAATTGTGTTGAATTTTTTTTCAACTAAAAAAATTGTGTTGGAGCAGTTCTCATGCATACATAGAAGCGTCCAAGATTAATCACAAGACCTGTTAGAATAAAAAATCCCAATTATAACTGGAAGGCCTTTTTAGATTGATTTTCACAGAAGGGTTTGAGAATTTTAGAGGTGTTGAATGAGATGAGGATAGTGGCAGCAGAAGAAGAAGATGATGTTTGTGGGGTCACATACAGTTTGATGCTGTGCATATAGACAAGAAGAAGGTTGCAGAAATTGGGCACACTGTACTGCA_-_ATGGACTTAGGGGGCCAACATGGAGCAGCAGGAGGCCAGATCCCGATGCCCATGCCTATGTCCACTGGCAGCTTTATACATGAATCCGCTGCCAGTCACTTGATCAACAATGTTAATGCGGGTCATATAGAGGAAGAGCAGCAGATAAAGTCCAAGAAGACTGTTAGGTATCGAGAATGTATGAAAAATCATGCAGCTGCCATGGGAGGGAACGCAACAGATGGGTGTGGAGAATTCATGCCCAGTGGCGAAGAAGGCACCTTGGAAGCCCTCAAGTGTTCTGCCTGCGATTGCCATCGTAATTTCCACCGCAGAGAAGTGGAGGGGGAGCCTTCTTGTGATTGCAATTTCCGAATTAGGGATCAGCTCAATCGCAAGAGGTCTGGAGTTCTAGTGTCGTCGCGTGCAGTACCTGGCACTGCTGCTGCTGCTGGCCCTCCGGATCCCTTTGCTTTTCCCTCGAACAATCTGCTCCCGCGGCTGCCTTCTCAGGCGATCATGTCCTACAGCACCGGGCCCTCTGAATCGGATGAGCTGGAGGGCACCTTCCTGTCACGTCCCGCCATTCTCAAGAAGCGTTTCAGAACCAAGTTCACGCAAGAGCAGAAGGATAGAATGCTGGACTTTGCAGAGAAAGTGGGGTGGAGAATCCAAAAGCATGATGAGCAGGCGGTACAGCAGTTCTGTCAAGACATTGGTGTGAAAAGACGCGTGCTCAAGGTCTGGATGCACAACAATAAGAACACGTTAGGGAAAAAAGAATGA___TTAATTGCAGATCACTTATCTATGATTCTAGAGCATAACAAACACTTAGGCAATTTGCTCTTATTGCTCTTCTAATTCCTTTCTAGGTATGCATATTATGTAGTAGAACAGACTGAACTGACCTCTGTAAGACTCATAGCTAGCAATGGGCTACATTCAAAGTAGTATTTTTCAGAGAACAATATCAAATCTAGATCAGTACGTTACACATGAATCTTATTTTACTGCTGTCTGGACTTTATGTATGAATTGATTTATGTTACACATTCCTGAGAATTTCTCCAGGATGGTACTTGATAATCCTAATTGCTTTACATTTCTCGTTCATAATTCATGATATGG

Fln Alignment:

Contig18122___MDLGGQHGAAGGQIPMPMPMSTGSFIHESAASHLINNVNAG--HIEEEQQIKSKKTVRYRECMKNHAAAMGGNATDGCGEFMPSGEEGTLEALKCSACDCHRNFHRREVEGEPSCDCNFRIRDQLNRKRSGVLVSSRAVXXXXXXXXXXXXXXXXSNNLLPRLPSQAIMSYSTGPSESDELEGTFLSRPAILKKRFRTKFTQEQKDRMLDFAEKVGWRIQKHDEQAVQQFCQDIGVKRRVLKVWMHNNKNTLGKK
A9NQC4_______________MDLGGQDGA---EIPMPMPMSTGSFIHESSTNLLINNVNAGPLHIEEEQ-IKSKKTVRYRECMKNHAAAMGGSATDGCGEFMPSGEEGTLEALKCSACECHRNFHRREVEGEPSCDC-FRIRDQLNRKRSGVLVSSRA---QGAAAIAPDPFAFPPNNLLPRLPPQAIMSYSTGPSESDELEGTFLSRPAILKKRFRTKFTQEQKDRMLDFAEKVGWRIQKHDEQAVQQFCQDIGVKRRVLKVWMHNNKNTLGKK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1730	92		8		0.999718
1896	75		25		0.996473

SSRs (tot: 3)

Start position	End position	Sequence	Length
324	344	GAGTTT GAGTTT GAGTTT GAG	21
707	718	AGA AGA AGA AGA	12
1220	1234	CTG CTG CTG CTG CTG	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain