SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18078

Length: 3303 nt

UniGene Fasta

>sp_v3.0_unigene18078
ATTTGATCAACATCCAATGTCCATCACTAAAGGGGCTTTTGGTAACAGTGCCGTGGCACAGAAGATTCCCCCTGTGACCTGCTCAGGCATGAGCCGCCCGCGTCGGCAATTGGGTTCCTCTCATGCGGCCTGAACAGGTGCTGGGAGTTGTGGGATCTGTGTTTTTCGCAGTGATCTGAATTGGGTCGTGTGGGTTTGCTGCTATGGAGTCTGGTCTGAATGACCCACATGGACTGCAGCACCATTCCTCCGATGATGCTAATGGCGATGGCGATAAGAGAATTGGGGTGGAGACAGGCAGCTCTGTATGTCCAGAGCTCTGGCATGCCTGTGCTGGCCCTCTCATATCTCTGCCTCCTAAGGGCAGTCGTGTTGTGTACTTTCCCCAGGGTCACCTGGAGCAGATTGCAGACAATGAGCTTCACAGGGGTGGCCGTGGCTCCTTCCTCAACATCAACCATGCGGCTGCACCGATGGCAGAGGAAGCATCTTCTGCAGCAGCCTTGAATATACCGCCATCGTCCATAGGTCAGGCCATGAACCAACAGATGCTTTCATACAAGCTGCCTCCCCAAATTCTCTGTCGTGTGCTGAATGTCAATCTACACGCCGACCAGGAGATGGATGAGGTCTATGCACAACTGACATTAGTTCCTGATTCCGAGAAGAATGAGAAATGCATGGAGGAACAACTTTCTGTACCTCCATCCAGCACTCCTCATATGTTCTGCAAGACGCTAACGGCTTCTGATACAAGTACACATGGCGGGTTTTCAGTTCCTCGAAGGGCTGCAGAGGACTGCTTTCCGCCCTTGGATTATAGCCAACAAAGGCCTTCTCAAGAGCTTGTCGCAAAGGATTTGCATGGAAGAGAATGGAGATTCCGGCATATATTCAGGGGTCAGCCTCGCAGGCATTTGCTCACTACAGGATGGAGTGTCTTTGTTAGTTACAAAAGGCTTGTAGCTGGAGATGCTGTACTTTTTCTGCGGGATGAAAATGGAGAATTGAGGTTAGGAATTCGAAGAGCTTCCCAGCAACAAAGCAGTGTACCTTCTTCAGTGCTCTCCAGCCATGGCATACATTCGGGGGTGCTAGCTGCTGTAGCTCATGCAGTTGCCACAAAAAGTATGTTCCACATTTACTACAATCCAAGGACGAGCCCTACAGAATTTGTGATTCCATATCACAAGTACGTAAAAAGTTTCAACCACTCATTTTCTATTGGGATGCGGTTCAAAATGAGATTTGAAACTGAAGATGCAACTGAAAGAAGGTACACTGGAACAATTGTTGGAATAGGTGATGTTGATCCTATGAGATGGCCTAATTCAAGATGGAGATCGTTCAAGGTAGGATGGGATGAGCATGCAGCACAGGAAAGGCAGGACAGGGTTTCTCCATGGGAAATCGAGCCATTTACTTCTGCTACAGGCTTGAATTCTCTTCCAGGTCCAAGAGTGAAAAGACTAAGGACAAGTTTTCCATCTGCACCAACAGATCTGTCTATCCCCGATGGGGATACTTTATCAGACTTTGGAGAATCTTCAAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATGTCACCGTTAAAAACGCCTTTTAGAACTGATATAATGGATTTTATGAAATATCGGTTAACTGATTCTAAGGCGCTGGATACTGAACATGAAATCTCTGGAGGAGCAAGGAGGACAGGGCCTGAAATATGGTCTCCATCAGGAAGAACTGATATTTCTCCTTCCTCAGATTTATCATGTGACAAACGGAAGTATGGACAGTTATATGGACTTGAGACTCCAAGCTCCATAAATTGTCCATCTGCAAAGAGCCCAGATACAAACCAACAACAACTTAGATACTTTACACAACTACATGGCAGGGAGAATGGTGTTGCACTACCTTTAAGCAATGGGACTTCCGCTGCACCGACTTCCTTACTCTCTCCCCTTTTCAAGTCACCACCAGTAAACAATTCAGAGTTGCATCTTTCTACAATATCCCCAACGTCTGTAGTAAGTGACTCTCGGAAAAGTGATTTATATTGGGATTTTTGGCAACCTTTTCCTTCTGGACGGAGTCCATCACAGACTGCTAGCGCTACTCCCAAAACAGTTTCCAGATGGAAGACTTCCTCAACTTCTCCTTGTTTGTCAGAAGATACTGAAGGTGCCTCAGGAGAAGTAAGGATTTCTTCAGATTACTCCTCAAAGGAAACCATGTGTTTGTCTTTCAAGCAGCATCAGCTTGCTTCAGAAGCATCCTGCCCTCAGGTAAAAGACATTAGCAAAGTGAAAGGAGAGCGGAATTGCAAACTCTTTGGATTCTCTTTGCTTAAGGAATCTGTTTGTGTAGATGATCCTATTAGTAGTGCAATGACAGAAGATGGTGTCAGTTCAGATGGTGGTTTGCATGTACCATCAGGTGATGGTCCTTTACAGACAGCTCACTCAAAAGACTCTGACCAGTCAGAGAAAGAGTTGCACAACCATTATGGTCATGAAATAACTCTGAGAAGTGTGGAACAAGAGATATCTTCTTATGCCAAACTTAGAAACTCTGTTCAAGCTTCTGGGCGTAGCTGTACAAAAGTTCATAAGCAAGGGAATGCTGTTGGAAGAGCAGTGGATCTATCAAAACTCCGTGGATACGATGAACTTATACGTGAATTGGAGCATCTTTTCAACATGGAAGGCTTACTAAGCACCCCTGAAAAGGGGTGGCATATTGTTTACACAGATAATGAAGGCGATATAATGCTTGTTGGAGATGATCCTTGGCAGGAATTTTGTAACATAGTCTGTAAAATACTGATATGCACTCAGGAAGAGGTGCAAAAGATGACACCTGGCATGTTCAGTGAGGATGCTCAGAGCTGTTTTGAGCAGCAGCCTACTACTGTGGAGGTTTCTAAGTGTTCTATTGATGGTCAGGATTCCTCCTCTCCTCTTGGTTCAGGAATCTAACTGATGATAAATTTGCTGTTTCTTGTCATTTTAAAGATGCCCTAATCTCAATGTACTCTTGAACTGGAGTGCGTGATGTGATACTGCAGCTTGTAGTTTTCAGTATGACTCTTAACCATGGGTTTTATTTTCTTGGGATAAGTCACTGTCATTCAGCAGAGTTTTGCTGTAACTTTAAATAGGTATTAAATTTAAACATACTTTAAACATACTCAATTATTTTCCCGGTTTTGCTCTCCATGATAGAATACTTTTATCTTTGTTTCATATGGACGCGTGGAACACATGGGAGGCACAATTCTGTATGGTTTATTGCCGACTAGGTTTTATTGCAATC

Ace file of the UniGene sp_v3.0_unigene18078

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	ARF-L2 protein (Fragment) n=1 Tax=Ginkgo biloba RepID=D4HTT9_GINBI	-	-	66%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg:

Fln protein: MESGLNDPHGLQHHSSDDANGDGDKRIGVETGSSVCPELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHRGGRGSFLNINHAAAPMAEEASSAAALNIPPSSIGQAMNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQERQDRVSPWEIEPFTSATGLNSLPGPRVKRLRTSFPSAPTDLSIPDGDTLSDFGESSRFQKVLQGQEMSPLKTPFRTDIMDFMKYRLTDSKALDTEHEISGGARRTGPEIWSPSGRTDISPSSDLSCDKRKYGQLYGLETPSSINCPSAKSPDTNQQQLRYFTQLHGRENGVALPLSNGTSAAPTSLLSPLFKSPPVNNSELHLSTISPTSVVSDSRKSDLYWDFWQPFPSGRSPSQTASATPKTVSRWKTSSTSPCLSEDTEGASGEVRISSDYSSKETMCLSFKQHQLASEASCPQVKDISKVKGERNCKLFGFSLLKESVCVDDPISSAMTEDGVSSDGGLHVPSGDGPLQTAHSKDSDQSEKELHNHYGHEITLRSVEQEISSYAKLRNSVQASGRSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSCFEQQPTTVEVSKCSIDGQDSSSPLGSGI*

Protein Length: 922

Fln nts: ATTTGATCAACATCCAATGTCCATCACTAAAGGGGCTTTTGGTAACAGTGCCGTGGCACAGAAGATTCCCCCTGTGACCTGCTCAGGCATGAGCCGCCCGCGTCGGCAATTGGGTTCCTCTCATGCGGCCTGAACAGGTGCTGGGAGTTGTGGGATCTGTGTTTTTCGCAGTGATCTGAATTGGGTCGTGTGGGTTTGCTGCT_-_ATGGAGTCTGGTCTGAATGACCCACATGGACTGCAGCACCATTCCTCCGATGATGCTAATGGCGATGGCGATAAGAGAATTGGGGTGGAGACAGGCAGCTCTGTATGTCCAGAGCTCTGGCATGCCTGTGCTGGCCCTCTCATATCTCTGCCTCCTAAGGGCAGTCGTGTTGTGTACTTTCCCCAGGGTCACCTGGAGCAGATTGCAGACAATGAGCTTCACAGGGGTGGCCGTGGCTCCTTCCTCAACATCAACCATGCGGCTGCACCGATGGCAGAGGAAGCATCTTCTGCAGCAGCCTTGAATATACCGCCATCGTCCATAGGTCAGGCCATGAACCAACAGATGCTTTCATACAAGCTGCCTCCCCAAATTCTCTGTCGTGTGCTGAATGTCAATCTACACGCCGACCAGGAGATGGATGAGGTCTATGCACAACTGACATTAGTTCCTGATTCCGAGAAGAATGAGAAATGCATGGAGGAACAACTTTCTGTACCTCCATCCAGCACTCCTCATATGTTCTGCAAGACGCTAACGGCTTCTGATACAAGTACACATGGCGGGTTTTCAGTTCCTCGAAGGGCTGCAGAGGACTGCTTTCCGCCCTTGGATTATAGCCAACAAAGGCCTTCTCAAGAGCTTGTCGCAAAGGATTTGCATGGAAGAGAATGGAGATTCCGGCATATATTCAGGGGTCAGCCTCGCAGGCATTTGCTCACTACAGGATGGAGTGTCTTTGTTAGTTACAAAAGGCTTGTAGCTGGAGATGCTGTACTTTTTCTGCGGGATGAAAATGGAGAATTGAGGTTAGGAATTCGAAGAGCTTCCCAGCAACAAAGCAGTGTACCTTCTTCAGTGCTCTCCAGCCATGGCATACATTCGGGGGTGCTAGCTGCTGTAGCTCATGCAGTTGCCACAAAAAGTATGTTCCACATTTACTACAATCCAAGGACGAGCCCTACAGAATTTGTGATTCCATATCACAAGTACGTAAAAAGTTTCAACCACTCATTTTCTATTGGGATGCGGTTCAAAATGAGATTTGAAACTGAAGATGCAACTGAAAGAAGGTACACTGGAACAATTGTTGGAATAGGTGATGTTGATCCTATGAGATGGCCTAATTCAAGATGGAGATCGTTCAAGGTAGGATGGGATGAGCATGCAGCACAGGAAAGGCAGGACAGGGTTTCTCCATGGGAAATCGAGCCATTTACTTCTGCTACAGGCTTGAATTCTCTTCCAGGTCCAAGAGTGAAAAGACTAAGGACAAGTTTTCCATCTGCACCAACAGATCTGTCTATCCCCGATGGGGATACTTTATCAGACTTTGGAGAATCTTCAAGATTCCAAAAGGTCTTGCAAGGTCAAGAAATGTCACCGTTAAAAACGCCTTTTAGAACTGATATAATGGATTTTATGAAATATCGGTTAACTGATTCTAAGGCGCTGGATACTGAACATGAAATCTCTGGAGGAGCAAGGAGGACAGGGCCTGAAATATGGTCTCCATCAGGAAGAACTGATATTTCTCCTTCCTCAGATTTATCATGTGACAAACGGAAGTATGGACAGTTATATGGACTTGAGACTCCAAGCTCCATAAATTGTCCATCTGCAAAGAGCCCAGATACAAACCAACAACAACTTAGATACTTTACACAACTACATGGCAGGGAGAATGGTGTTGCACTACCTTTAAGCAATGGGACTTCCGCTGCACCGACTTCCTTACTCTCTCCCCTTTTCAAGTCACCACCAGTAAACAATTCAGAGTTGCATCTTTCTACAATATCCCCAACGTCTGTAGTAAGTGACTCTCGGAAAAGTGATTTATATTGGGATTTTTGGCAACCTTTTCCTTCTGGACGGAGTCCATCACAGACTGCTAGCGCTACTCCCAAAACAGTTTCCAGATGGAAGACTTCCTCAACTTCTCCTTGTTTGTCAGAAGATACTGAAGGTGCCTCAGGAGAAGTAAGGATTTCTTCAGATTACTCCTCAAAGGAAACCATGTGTTTGTCTTTCAAGCAGCATCAGCTTGCTTCAGAAGCATCCTGCCCTCAGGTAAAAGACATTAGCAAAGTGAAAGGAGAGCGGAATTGCAAACTCTTTGGATTCTCTTTGCTTAAGGAATCTGTTTGTGTAGATGATCCTATTAGTAGTGCAATGACAGAAGATGGTGTCAGTTCAGATGGTGGTTTGCATGTACCATCAGGTGATGGTCCTTTACAGACAGCTCACTCAAAAGACTCTGACCAGTCAGAGAAAGAGTTGCACAACCATTATGGTCATGAAATAACTCTGAGAAGTGTGGAACAAGAGATATCTTCTTATGCCAAACTTAGAAACTCTGTTCAAGCTTCTGGGCGTAGCTGTACAAAAGTTCATAAGCAAGGGAATGCTGTTGGAAGAGCAGTGGATCTATCAAAACTCCGTGGATACGATGAACTTATACGTGAATTGGAGCATCTTTTCAACATGGAAGGCTTACTAAGCACCCCTGAAAAGGGGTGGCATATTGTTTACACAGATAATGAAGGCGATATAATGCTTGTTGGAGATGATCCTTGGCAGGAATTTTGTAACATAGTCTGTAAAATACTGATATGCACTCAGGAAGAGGTGCAAAAGATGACACCTGGCATGTTCAGTGAGGATGCTCAGAGCTGTTTTGAGCAGCAGCCTACTACTGTGGAGGTTTCTAAGTGTTCTATTGATGGTCAGGATTCCTCCTCTCCTCTTGGTTCAGGAATCTAA___CTGATGATAAATTTGCTGTTTCTTGTCATTTTAAAGATGCCCTAATCTCAATGTACTCTTGAACTGGAGTGCGTGATGTGATACTGCAGCTTGTAGTTTTCAGTATGACTCTTAACCATGGGTTTTATTTTCTTGGGATAAGTCACTGTCATTCAGCAGAGTTTTGCTGTAACTTTAAATAGGTATTAAATTTAAACATACTTTAAACATACTCAATTATTTTCCCGGTTTTGCTCTCCATGATAGAATACTTTTATCTTTGTTTCATATGGACGCGTGGAACACATGGGAGGCACAATTCTGTATGGTTTATTGCCGACTAGGTTTTATTGCAATC

Fln Alignment:

Contig18078___MESGLNDPHGLQHHSSDDANGDGDKRIGVETGSSVCPELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHRGGRGSFLNINHXXXXXXXXXXXXXXLNIPPSSIGQAMNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRAXXXXXXXXXXXXXXHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQERQDRVSPWEIEPFTSATGLNSLPGPRVKRLRTSFPSAPTDLSIPDGDTLSDFGESSRFQKVLQGQEMSPLKTPFRTDIMDFMKYRLTDSKALDTEHEISGGARRTGPEIWSPSGRTDISPSSDLSCDKRKYGQLYGLETPSSINCPSAKSPDTNQQQLRYFTQLHGRENGVALPLSNGTSAAPTSLLSPLFKSPPVNNSELHLSTISPTSVVSDSRKSDLYWDFWQPFPSGRSPSQTASATPKTVSRWKTSSTSPCLSEDTEGASGEVRISSDYSSKETMCLSFKQHQLASEASCPQVKDISKVKGERNCKLFGFSLLKESVCVDDPISSAMTEDGVSSDGGLHVPSGDGPLQTAHSKDSDQSEKELHNHYGHEITLRSVEQEISSYAKLRNSVQASGRSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQSCFEQQPTTVEVSKCSIDGQDSSSPLGSGI
E1UHY2_______________MESGLNDPHGLQHHSSDDANGDGDKRIGVETGSSVCPELWHACAGPLISLPPKGSRVVYFPQGHLEQIADNELHRGGRGSFLNVNHAAAPMAEEASSAAALNIPPSSISQAVNQQMLSYKLPPQILCRVLNVNLHADQEMDEVYAQLTLVPDSEKNEKCMEEQLSVPPSSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGREWRFRHIFRGQPRRHLLTTGWSVFVSYKRLVAGDAVLFLRDENGELRLGIRRASQQQSSVPSSVLSSHGIHSGVLAAVAHAVATKSMFHIYYNPRTSPTEFVIPYHKYVKSFNHSFSIGMRFKMRFETEDATERRYTGTIVGIGDVDPMRWPNSRWRSFKVGWDEHAAQERQDRVSPWEIEPFTSATGLNALPGPRVKRLRTSFPSAPTDLSIPDGDTLSDFGESSRFQKVLQGQEMSPLKTPFRTDIMDFMKYRVSDSKALDTEHEISGGARRGGPEIWPPSGRTDISPSSDLSCDKRKYGQLYGLETPSSINCPSAKSPDTN-QQLRYFTQLHGRENGVALPLSNGPSAAPTSLLSPLFKSPPVNNSELHLSTISPTSVVSDSRKSDLYWDFWQPFPSGRSPSQAASATPKTASRWKTSSTSPCLSEDTEGASGEVRISSDYSSKKTMCLSFKQHQLASEASCPQAKDISKVKGERNCKLFGFSLLKESVCVDDPINSAMTEDGVSSEGGLHVPSGDGPLQTAHSKDSDQSEKELHNHYGHEITLRSVEQEISSYAKLRNSVQASGRSCTKVHKQGNAVGRAVDLSKLRGYDELIRELEHLFNMEGLLSTPEKGWHIVYTDNEGDIMLVGDDPWQEFCNIVCKILICTQEEVQKMTPGMFSEDAQTCFEQQPTTVEVSKCSIDGQDSSSPLGSGI

SNPs (tot: 5)

Position	A %	C %	T %	Probability
2521		20	80	0.995493
2653		54	45	1.0
3172		33	66	0.997452
3176	66		33	0.997452
3177		66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain