SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene18056

Length: 848 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene18056

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative cinnamoyl CoA reductase [Arabidopsis thaliana]	-	-	4.0e-28	34%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%

Source	GOs	Term	Type	Identity
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVV1

Fln msg: Distance to subject end: 109 aas, your sequence is shorter than subject: 250 - 317

Fln protein: MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPV*LV**IAGVSCMN*FMNLRFS*NLDNFGGNQGFHNCYWAL*TDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVI

Protein Length: 251

Fln nts: ATGGGGGCCTCCCTCTGATCAGAGCTTGAAGCTCTGTCTTCTCTGATATCGCTTCATTCCATCATCCAGGAGCTTCTGTTGTATCCATTCCCTCAAA_-_ATGGATGCCTACCTTGAAGAAAATGGATACAGCGCTTCCAATTCTCGGAAATTAATGTGCCTTACCGGGGGCTGGAGTTTCCTGGGTATTCATATCGCAAGAATGCTGCTCGGCCGGGGTTACTCAGTCCGTTTCGCAATTCCTGTAACGCCAGAAGAGGCAGGCTCACTTATGGAATCCGAAGAAGCATTATCGGGGAAGCTGGAGATATGCCAAGCCGATCTCTTGGATTATCGCAGCGTTTTCGGCAACATCAATGGCTGCTCCGGAGTTTTCCACGTCCCTGCGCCCTGTGATCATCTGGATGGATTACAGGAGTATCCGGTATGATTAGTTTAATAGATTGCGGGGGTATCCTGTATGAATTAGTTTATGAATTTAAGGTTTTCTTAGAATTTGGATAATTTTGGGGGAAACCAAGGGTTTCATAATTGTTATTGGGCGCTGTAGACTGATAGCATAGACTACGAGGTTCAAAGCGCGTTGAATGTGGTGGAAGCCTGCGCTGCCGCAGAGAGTGTGAAGCGTTTGGTGTTCACTTCCTCTGTATCGGCCATTGTTTGTGGGAGGAGGACTGGCAATCTTGGCGATGGTGAAATTATGGACGAGAAGTGCTGGACCAATCTTGAATTTTGTCGTGAAAAGAAGTTGTGGTCGCCATTGGCAAAGACTCTCTCAGAGAAAGCTGTATGGGCACTCTCAAATGATAGGGACCTTAACCTAGTAGTAGTGAATCCTGCTTCAGTCATTG

Fln Alignment:

Contig18056___MDAYLEENGYSASNSRKLMCLTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLMESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYPV*LV**IAGVSCMN*FMNLRFS*NLDNFGGNQGFHNCYWAL*TDSIDYEVQSALNVVEACAAAESVKRLVFTSSVSAIVCGRRTGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVI
A9NVV1_______________MEGYLEENGYGASDSRRLMCVTGGWSFLGIHIARMLLGRGYSVRFAIPVTPEEAGSLVESEEALSGKLEICQADLLDYRSVFGNINGCSGVFHVPAPCDHLDGLQEYP------------------------------------------TDSVDYEVQSALNVVEACAGAESVKRLVFTSSVSAIVCGRRIGNLGDGEIMDEKCWTNLEFCREKKLWSPLAKTLSEKAVWALSNDRDLNLVVVNPASVI

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
350	87		12		0.992554
395		87		12	0.999964
452		12		87	0.999964
508	10		90		0.90298
602		10	90		0.999898
804	80		20		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain