SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17981

Length: 1750 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17981

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastidial delta-12 oleate desaturase n=3 Tax=Olea europaea RepID=A9UKE1_OLEEU	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	72%
Sma3	Omega-6 fatty acid desaturase, chloroplastic	-	-	2.611e-12	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxidoreductases, Acting on paired donors, with incorporation or reduction of molecular oxygen, With oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water.	EC:1.14.19.-	-	2.135e-09	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	alpha-Linolenic acid metabolism	00592		2.135e-09	%
Sma3	Biosynthesis of unsaturated fatty acids	01040		2.135e-09	%

Source	Gene names
Sma3	At4g30950; CHLREDRAFT_56668; DES6; F6I18.140; FAD6; FAD6-BN-1; FAD6-BN-2; FAD6-BO-1; FAD6-BR-1; FADC; Fad6; GSVIVT00004305001; Os08g0440900; OsI_29379; OsJ_27475; P0524F03.46; P0528B09.19; PHYPADRAFT_127762; PHYPADRAFT_130304; PHYPADRAFT_222981; POPTRDRAF

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	plastid inner membrane	GO:0009528	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3	fatty acid biosynthetic process	GO:0006633	Biological Process	-
Sma3	photoinhibition	GO:0010205	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Fatty acid desaturase, type 1	IPR005804	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G30950.1	FAD6, FADC, SFD4 fatty acid desaturase 6 chr4:15057278-15059673 REVERSE LENGTH=448	73%
RefSeq	Arabidopsis thaliana	NP_194824.1	omega-6 fatty acid desaturase [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002308396.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV95

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 1152 and 1139,

Fln protein: MASSLCGGTTVNLLPHAQCGLRFPIKKAHHGSTSSSRTAAFWWSGRDRSxxxAIQHGWPDKRLQKTIFAVMPLAPSSLSDQEERNHISEKYGFTQIGEPVPDNVTLKNVIDSLPQEVFEIDDTKAWKTVAISVAAYSLGLFLIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSRNKLAEDIVGTLAFLPLIYPYEPWRFKHDRHHAKTNMLGEDTAWHPVWREEYETSKVLKVALTVGYGPIRPLMSIAHWLGWHFDLKKFRPSEQNRVKISLACIFAFVAIVWPMIIYKTGIIGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPENWNAAQAQLGGTIHCDYPHWIEILCHDINxxxxxxxHISQKIPSYNLRLAHDSLRKNWGKYLNEAKWNWRLMKTIMTKCHIYDEENNYVAFDEGLPEESKIIGFVRRMMPNIA*

Protein Length: 450

Fln nts: GTTCCCTCCAAAGAATGCATGTCTACCATTGAGGCGAGGAGAGC_-_ATGGCGTCTTCGTTGTGTGGTGGGACGACTGTAAATCTTCTTCCTCATGCCCAGTGCGGCTTGAGGTTTCCGATCAAGAAGGCTCACCATGGATCGACTAGTTCTAGTCGAACTGCTGCTTTCTGGTGGTCTGGAAGAGATCGTTCCxxxxxxxxxGCAATCCAGCATGGTTGGCCAGATAAAAGGTTGCAAAAAACTATCTTTGCAGTGATGCCTCTTGCACCATCCTCTCTTAGTGATCAGGAGGAAAGGAATCACATTTCTGAAAAATATGGATTTACCCAGATAGGGGAACCTGTTCCAGACAATGTAACTTTGAAGAATGTTATTGACTCCTTACCGCAAGAGGTCTTTGAGATTGATGATACAAAGGCTTGGAAAACTGTGGCAATATCAGTTGCTGCTTATTCTCTGGGGCTTTTCCTAATAGCAAAAGCACCTTGGTACCTCCTCCCTCTGGCTTGGGCATGGACTGGAACAGCTATTACCGGGTTTTTTGTTATAGGTCATGATTGTGCTCACAAGTCTTTCTCAAGGAACAAACTGGCAGAGGACATTGTTGGTACTCTGGCCTTTTTGCCATTAATCTACCCATATGAACCATGGCGTTTTAAGCATGATAGACATCATGCTAAGACAAACATGCTAGGCGAAGATACTGCTTGGCATCCTGTTTGGAGAGAGGAATATGAAACATCCAAGGTTTTGAAGGTGGCATTGACAGTTGGATATGGCCCTATTCGCCCATTGATGTCAATTGCTCATTGGTTGGGATGGCACTTTGATTTGAAAAAATTTAGGCCTAGTGAACAAAATAGAGTGAAGATAAGCCTGGCATGTATATTTGCCTTTGTGGCAATTGTATGGCCAATGATAATATACAAGACAGGAATTATTGGCTGGATCAAGTTTTGGTTGATGCCATGGCTTGGTTATCACTTTTGGATGAGTACTTTCACAATGGTCCATCATACAGCACCTCATATACCTTTCAAATCTCCAGAAAACTGGAATGCGGCCCAGGCTCAGTTGGGCGGAACAATTCATTGTGACTATCCTCATTGGATTGAAATTCTGTGTCATGATATCAATGxxxxxxxxxxxxxxxxxxCTCATATTTCACAGAAGATTCCAAGTTACAACTTGCGGCTAGCTCATGATTCTCTCCGGAAGAATTGGGGCAAGTATCTTAATGAGGCTAAGTGGAACTGGCGCCTAATGAAGACAATCATGACAAAGTGTCACATTTATGATGAGGAAAATAATTATGTGGCATTTGATGAAGGTCTACCTGAAGAGTCTAAAATCATTGGATTTGTCAGGAGAATGATGCCCAACATTGCCTGA___AATGCATAGATATCTCCTCTACTGCTATTGAACCATTGCCGACACATTACCCAAGTGTTGATTTTTGCCATCTGTAGCTTTTATTCTGACAGTCATCGTCATGATTTTCTCTCTTCAATCAAATAAAGCTATAGTAAAGGTCTCTTCAATCAAATGAAGCTATCGTAAAGGTCAGATGCAGAATAAGATGGTTGACCTTAAATATTTATGTGATTTTTAATTCCCCAAGACATCATTTTCAAATGAGGGTTAGTATTACTTGACAATGTCTCGGAAATCCACGTGATGATGAGTTAAGATATTGGCATATAGGGATGCAGACAAAATTTTGAAATCACTGGCAGAGGTATCAATTGTTTTCAT

Fln Alignment:

Contig17981___MASSLCGGTTVNLLPHAQCGLRFPIKKAHHGSTSSSRTAAFWWSGRDRSGYxxxxxxxxxxxxxGMAIQHGWPDKRLQKTIFAVMPLAPSSLSDQEERNHISEKYGFTQIGEPVPDNVTLKNVIDSLPQEVFEIDDTKAWKTVAISVAAYSLGLFLIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSRNKLAEDIVGTLAFLPLIYPYEPWRFKHDRHHAKTNMLGEDTAWHPVWREEYETSKVLKVALTVGYGPIRPLMSIAHWLGWHFDLKKFRPSEQNRVKISLACIFAFVAIVWPMIIYKTGIIGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPENWNAAQAQLGGTIHCDYPHWIEILCHDINVxxxxxHISQKIPSYNLRLAHDSLRKNWGKYLNEAKWNWRLMKTIMTKCHIYDEENNYVAFDEGLPEESKIIGFVRRMMPNIA
A9NV95_______________MAYSLCGGTNLNLLPHAHGGLRFQFKKAHHGLSSSNRAAALWWSGGDRSGFxxxxxxxxxxxxxGMSIRHGWPDKKLQKTIFAAMPLAPSSLSDREERNRISEKYGFTQIGEPVPDNIILKNVIDSLPQEVFEIDDTKAWKTVAISVAAYSLGLFLIAKAPWYLLPLAWAWTGTAITGFFVIGHDCAHKSFSRNKLVEDIVGTLAFLPLIYPYEPWRFKHDIHHAKTNMLGEDTAWHPVLREEYETSKVLRAALTVGYGPIRPWMSIAHWLGWHFDLKKFRPSEQNRVKISLTCIFSFVAIVWPMIIYKTGIIGWIKFWLMPWLGYHFWMSTFTMVHHTAPHIPFKSPESWNAAQAQLGGTVHCDYPRWIEILCHDINVxxxxxHISQKIPSYNLRLAQDSLRKNWGKYLNEAKWNWRLMKTIMTKCHIYDEENNYVAFDEDLPEESKVIGFVRRMMPNIA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain