SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17976

Length: 1361 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17976

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Elongation factor Tu n=3 Tax=Spermatophyta RepID=A9NWL9_PICSI	-	-	85%
FL-Next	sp=Elongation factor Tu; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Elongation factor Tu	-	-	-

Source	Gene names
Sma3	AT4G20360; At4g20360; EF-Tu; F9F13.10; GSVIVT00015974001; GSVIVT00020631001; Grc000074; Heak293_Cp119; MicpuC_chl6; OJ1126_D09.31-1; OsI_07899; OsJ_07364; OtCpg00250; PHYPADRAFT_217801; POPTRDRAFT_1067026; POPTRDRAFT_414537; RCOM_1508490; TUFA; TUFB; TUFB

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	cyanelle	GO:0009842	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	translation elongation factor activity	GO:0003746	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	translational elongation	GO:0006414	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Translation elongation factor EFTu/EF1A, bacterial/organelle	IPR004541	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G20360.1	ATRAB8D, ATRABE1B, RABE1b RAB GTPase homolog E1B chr4:10990036-10991466 FORWARD LENGTH=476	84%
RefSeq	Arabidopsis thaliana	NP_193769.1	Elongation factor Tu [Arabidopsis thaliana]	84%
RefSeq	Populus trichocarpa	XP_002304468.1	predicted protein, partial [Populus trichocarpa]	86%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWL9

Fln msg: your sequence is shorter than subject: 298 - 490

Fln protein: MPQTKEHILLAKQVGVPNVVVFLNKEDQVDDEELLQLVELEVRELLSSYEFPGDDVPIVSGSALLALEALMANPNIKRGEDKWVDKIYELMDAVDEYIPIPQRQTDLPFLMAVEDVFSITGRGTVATGRIERGSVRVGETVEIVGLRETRVTTVTGLEMFQKVLDEALAGDNAGMLLRGIQKIDIERGMVLAKPGSITPHSKFAAIVYVLKKEEGGRHSPFFIGYSPQFYMRTTDVTGKVSAIMNDRDEESKMVMPGDRVKMVVELIAPVACEQGMRFAIREGGRTVGAGVIHSIIE*

Protein Length: 299

Fln nts: ATGCCACAGACCAAGGAGCACATCCTGCTGGCTAAGCAGGTGGGTGTGCCCAATGTGGTGGTGTTCTTGAACAAGGAGGATCAGGTTGATGATGAGGAGTTGCTTCAGTTGGTTGAGCTTGAGGTCAGGGAGCTCTTGAGTTCTTATGAGTTTCCAGGGGATGATGTGCCGATTGTTTCAGGATCGGCGCTCCTGGCTCTGGAGGCCTTGATGGCGAATCCAAACATCAAGCGGGGTGAGGATAAATGGGTGGATAAAATTTATGAGCTCATGGATGCAGTGGATGAGTACATTCCAATTCCACAGAGGCAGACTGATCTCCCCTTCTTGATGGCAGTGGAGGATGTTTTTTCGATCACCGGTCGGGGGACTGTCGCAACAGGGCGCATTGAGAGAGGGTCTGTTAGGGTTGGAGAGACTGTAGAGATTGTTGGGTTGAGGGAAACGAGGGTGACTACAGTGACTGGGCTTGAGATGTTCCAGAAGGTGCTGGATGAGGCACTTGCAGGGGACAATGCAGGTATGCTTCTGAGGGGTATTCAGAAGATCGATATAGAGAGGGGAATGGTTTTGGCAAAGCCTGGGTCTATAACTCCTCATTCGAAGTTTGCAGCAATTGTTTATGTGCTCAAGAAAGAAGAAGGGGGGAGGCATTCTCCGTTTTTTATAGGGTATAGTCCCCAGTTTTACATGAGGACTACGGATGTCACTGGCAAGGTAAGTGCTATAATGAATGACAGGGATGAGGAGTCGAAGATGGTGATGCCTGGGGATCGTGTGAAGATGGTTGTTGAATTGATTGCACCGGTGGCATGTGAGCAGGGTATGAGATTTGCCATTAGGGAGGGGGGCAGGACAGTTGGTGCTGGTGTTATTCATTCCATCATTGAGTAG___GCAAAGAAGTCTCAAATGATTGGCTACGAAAATTTCTTGCACAGATGTTGTCATTGGAAATCATACTTTGTTATTTTGGAAATAGAACAGTATGCTTGGAGGTAACAGTAACAGATTTAGTTATACTTGATTATATTTTCAATATCTTGTACAGCTTTCTTGCAGTGCTGTGAAAGCAGAATTGGAGACTAATGTCATTTTTTTCCACCAAAGTAGAGGTAAGAGTGAGAAGGCCACGCTGAAGTTTTCTTGAATTTATTTCGTATGCAATGGGTTACAATTGCAGAGGATTCGATTTCATAATAAGCAGATTCACTGCCCTAGAGTAGCTTGGATGGGTCAGTAATGGCTCGACTGAACTTCATCTGTTTTCATGTAAAAGACAAGTTTATGCTTATCTATAAACTGTTTTTCACTTGTTGACAGTATCAATAGAAATGACTCACTATTTTAGTTTAAGATTACCC

Fln Alignment:

Contig17976___MPQTKEHILLAKQVGVPNVVVFLNKXXXXXXXXXXXXXXXXXXXXXSSYEFPGDDVPIVSGSALLALEALMANPNIKRGEDKWVDKIYELMDAVDEYIPIPQRQTDLPFLMAVEDVFSITGRGTVATGRIERGSVRVGETVEIVGLRETRVTTVTGLEMFQKVLDEALAGDNAGMLLRGIQKIDIERGMVLAKPGSITPHSKFAAIVYVLKKEEGGRHSPFFIGYSPQFYMRTTDVTGKVSAIMNDRDEESKMVMPGDRVKMVVELIAPVACEQGMRFAIREGGRTVGAGVIHSIIE
A9NWL9_______________MPQTKEHILLAKQVGVPNVVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDVPIISGSALLALEALMANPSIKRGEDRWVDKIYELMDAVDEYIPIPQRQTELPFLMAVEDVFSITGRGTVATGRVERGCIKVGESVEIVGLRETRVTTVTGLEMFQKVLDESLAGDNVGMLLRGIQKADIERGMVLAKPGSITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELITAVACEQGMRFAIREGGKTVGAGVIQAIIE

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
135		33	66		0.997452
146	33			66	0.997452
171			66	33	0.997452
233	33		66		0.997452
265		33		66	0.997452
337	33		66		0.997452
632		66		33	0.99834
670		16		83	0.995451
770		57		42	1.0
815	50		50		1.0
1159			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain