SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17935

Length: 1872 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17935

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Rubrerythrin domain containing protein	-	-	9.99995e-41	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	93%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transition metal ion binding	GO:0046914	Molecular Function	-
Sma3	chlorophyll biosynthetic process	GO:0015995	Biological Process	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase	IPR008434	-	0.0	-
Sma3	Rubrerythrin	IPR003251	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G56940.1	CRD1, CHL27, ACSF dicarboxylate diiron protein, putative (Crd1) chr3:21076594-21078269 FORWARD LENGTH=409	87%
RefSeq	Arabidopsis thaliana	NP_191253.1	magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002323198.1	predicted protein [Populus trichocarpa]	91%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUZ9

Fln msg:

Fln protein: MPAMAAHSLVDLALPLRLGTSDSSLSSCRTLGGYGFRPLPSMVNRERRACSYSHCGVKAAAASETVVKEKKPKNNNKKGAKEGIKESLLTPRFYTTDFDEMEMLFNTEINKNLDQSEFKALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVGINQQIIAIGESQAPGFVKNVQRIPLIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY*

Protein Length: 434

Fln nts: ATGGGGTAGCAGCTCAGCGCAATCCAATCCTATCCCCATAATCAACCAGATTCAATTATCTCTTTTCTCATTGGCTCTGTTTAATCTGACGTGTCCACATCGTTACCACTTGGTCTCAGCTGAGCAAGAGCTCTCAGCCTCTACATCAAATGCTACGCCTCTCTCGCTCTGCTTAGTCTCGTTGTGGGAATTAAGCTTCCGAGGCGTAGTACTCACA_-_ATGCCAGCCATGGCAGCCCATTCCTTAGTAGATTTAGCTCTTCCACTGCGGTTGGGTACATCAGATTCATCACTGTCTTCGTGTAGGACGCTCGGTGGCTATGGCTTTAGGCCATTGCCATCGATGGTGAATAGGGAAAGACGAGCTTGCTCATACAGTCATTGTGGAGTGAAGGCCGCTGCTGCTTCCGAGACTGTCGTGAAAGAGAAGAAGCCCAAGAATAATAATAAGAAGGGTGCCAAAGAAGGCATCAAAGAATCACTGCTCACCCCTCGCTTCTACACAACTGACTTTGATGAGATGGAGATGCTGTTCAACACTGAAATCAACAAGAATCTCGATCAGTCAGAGTTCAAAGCCTTGCTTGCAGAATTTAAGACTGATTATAATCAAACCCATTTCGTCAGAAATCCAGAATTCAAGGAGGCTGCAGACAAAATGCAAGGCCCACTCAGAAAGATCTTTGTTGAGTTTCTGGAGAGGTCATGTACTGCTGAGTTTTCCGGATTTCTTCTCTACAAGGAACTCGGAAGAAGACTCAAGAAAACCAATCCAGTTGTGGCTGAGATATTTTCCCTCATGTCCAGAGATGAAGCTCGCCATGCAGGGTTTCTGAACAAGGGTTTATCAGATTTCAATCTTGCACTGGACCTTGGTTTCCTAACTAAAGCACGCAAATATACGTTTTTCAAGCCTAAGTTCATATTCTATGCCACTTACTTATCTGAGAAGATCGGTTACTGGAGATATATTACCATCTATAGGCACCTAAGAGAAAACCCTGAGTATCAAGTGTATCCTATATTCAAGTACTTTGAGAACTGGTGCCAGGATGAGAATAGGCACGGTGACTTTTTCTCAGCTTTAATGAAAGCACAGCCACAGTTTCTGAATGACTGGAAGGCCAAGCTTTGGTCAAGGTTTTTCTGTCTCTCGGTATATGTGACAATGTACTTGAATGATTGCCAGAGGACAGCATTTTATGAAGGCATTGGACTGAACACAAAAGAGTTCGATATGCATGTTATCATTGAGACAAATCGAACTACAGCAAGGATTTTTCCTGCTGTCTTGGATGTTGAGAATCCAGAATTCAAAAAGAAACTCGACAGGATGGTAGGCATCAACCAGCAGATAATAGCAATTGGAGAAAGCCAAGCTCCTGGCTTTGTGAAGAATGTCCAAAGAATTCCTCTTATAGCTGCCTTGGTGTCAGAATTAATAGCAGCTTATTTGATGCCACCCGTGGATTCCGGTTCTTTGGATTATGCTGATTTTGAGCCACAGGTTGTGTACTAA___ATGCATTTCATACATGCGGAACTGCAGGGTTGCACTATATAGTCGAGAATGGAGCTCTCTGATCCTGTGCCTTTCTTTGTAGTTGCTTGTATTTGGAGATATCGTACCCTTTTCTAGAAAGCAATTCAATTTCTGTAGGAAAATTGTGTTTACATATGCACATGCTACATACACCGTTGGAGTTATGTACTCGAAATTTCTCAGCAATGGAAAGTCCATATGTCTTGTTACTAAACAAAATATTCTTAGACCATAGCAGAACATCTTTACAGGACCATTGCAAGATCGTACAGATGAATAATCCAGAAATGAGTAGTGTCCTTGTAATTTTTTGTTCTACATTTTCTTCTTTTATT

Fln Alignment:

Contig17935___MPAMAAHSLVDLALPLRLGTSDSSLSSCRTLGGYGFRPLPSMVNRERRACSYSHCGVKAAAASETVVXXXXXXXXXXXXXXXXXXXSLLTPRFYTTDFDEMEMLFNTEINKNLDQSEFKALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVGINQQIIAIGESQAPGFVKNVQRIPLIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY
A9NUZ9_______________MPAMAAHSLADLSLAVRLGTSDSSLSSCRTLGGYGFRPLPLMVNRERRACSYSHGGVKVAAASEVAVKEKPKNNNKKGAKEGIKE-SLLTPRFYTTDFDEMETLFNTEINKNLDQSEFQALLAEFKTDYNQTHFVRNPEFKEAADKMQGPLRKIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLRENPEYQVYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTAFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKKKLDRMVDINRQIIAIGESQAPGFVKNLQRIPFIAALVSELIAAYLMPPVDSGSLDYADFEPQVVY

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
232			33	66	1.0
354	33		66		1.0
754	6	93			0.999998
1611		72		27	1.0
1660	90	10			0.90298
1664	11		88		0.923564
1665		11		88	0.923564
1666	11		88		0.923564
1692	37	62			1.0
1694	37		62		1.0
1725	80			20	0.995493
1752	75	25			0.996473
1754		75		25	0.996473
1755	75			25	0.996473
1843		12		87	0.992554
1846	40			60	1.0
1847	25			75	0.996473
1848	25			75	0.996473
1849		25		75	0.996473

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain