SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17911

Length: 1774 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17911

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	aldo/keto reductase family protein [Arabidopsis thaliana] dbj\|BAB11492.1\| aldose reductase-like protein [Arabidopsis thaliana] gb\|AAY78879.1\| aldo/keto reductase family protein [Arabidopsis thaliana] gb\|AED97606.1\| aldo/keto reductase family protein [Arab	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aldo/keto reductase	IPR001395	-	0.0	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62420.1	NAD(P)-linked oxidoreductase superfamily protein chr5:25064835-25066111 FORWARD LENGTH=316	51%
RefSeq	Arabidopsis thaliana	NP_201048.1	aldo/keto reductase family protein [Arabidopsis thaliana]	51%
RefSeq	Populus trichocarpa	XP_002326793.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPH6

Fln msg:

Fln protein: MGSVGRVLELNTGTKIPLVGLGTAAMNQNPEDIKTAVATAIEVGYRHFDTASLYRSECPLGDALKDAFLKGLVAREEVFVTTKLWCGDLDDPVSALRTSLKNLQLDYVDLYLIHWPVRLRKEASFPIPKEEDFLPLDLESVWQGMEQCVHLGLTKAIGVSNFSSKKIGDLLSHAKIPPAVNQVEMHPLWQQQKLRDYCSKVNIHVSAWSPLGGPPKAQGSNGVIDNPVIEEIAEKYGKTTAQVILRWGLEQGVSVLPKSYNKGRITQNFQVFDWSLTAEDHSKISRLEQKKANRAQEMINSTTSPYKSVEELWDGEI*

Protein Length: 319

Fln nts: ATGGGGGAACACCAGATGTGATAAGTTCATTCATTCAAATATGAAATCATCTCAACTTGTCCCTGACACCTCTGCCAATGCAAAGAAACAAACGTGGTTGGAATTTATTGGAAGACCTGTTCGGAATATCTCATCACAATCTCGTCACAGTCCTTCCGACTGTGATTCTGGCTACATATTAGTCTCTACCAGCTTTTTCCAAAAGAAGAATCCAAGCCATTTTGCTTGTTGGATGCTCTGATCGTCACTGGTCACTGCTTCAAAATTTTCCAAGAAAACCTTTTGCCAGAGTCTGCTAAA_-_ATGGGGAGTGTAGGCAGAGTTCTAGAGCTCAACACAGGCACCAAAATACCATTGGTCGGTCTTGGAACAGCTGCCATGAATCAAAACCCCGAGGACATTAAGACAGCAGTGGCTACGGCAATAGAGGTGGGTTACAGGCACTTTGACACAGCTAGCCTATACAGGTCAGAATGTCCCTTGGGAGATGCTCTAAAGGATGCCTTTTTGAAGGGCTTAGTGGCACGGGAGGAGGTTTTTGTGACCACAAAACTGTGGTGTGGAGATTTAGATGATCCTGTATCTGCATTGAGGACGAGCTTAAAGAATTTGCAGCTGGATTATGTGGATTTGTACCTTATCCACTGGCCCGTAAGGTTGAGAAAGGAAGCCTCCTTTCCAATCCCCAAGGAGGAAGACTTTTTGCCCTTAGATCTTGAGTCTGTATGGCAAGGAATGGAACAATGTGTTCATCTGGGGCTCACAAAAGCCATTGGCGTGAGCAACTTCTCTTCTAAGAAGATTGGGGATCTGTTGAGCCATGCCAAGATTCCACCTGCTGTCAATCAGGTGGAGATGCATCCACTATGGCAACAACAAAAGTTGAGAGATTATTGCAGCAAGGTGAACATTCACGTGAGTGCATGGTCTCCTCTTGGAGGCCCCCCTAAAGCACAGGGTTCAAATGGTGTTATTGATAACCCTGTTATTGAAGAGATCGCTGAAAAATATGGAAAAACTACTGCTCAGGTTATATTGAGGTGGGGTTTGGAACAGGGAGTAAGTGTGTTGCCAAAAAGCTACAACAAAGGGAGAATAACTCAGAATTTTCAGGTATTTGACTGGTCTTTAACTGCAGAAGATCATTCAAAAATCAGCAGACTGGAACAGAAGAAGGCCAATAGGGCACAGGAAATGATTAACTCTACCACCAGCCCTTACAAATCTGTTGAAGAATTGTGGGATGGAGAGATCTAA___CAAGATAATTAGTATATTGAGTGTTATTTGATTCATCTGTACTATGGAGGAAGATATTTTTAACCTCAAACTAAAAGATGTTAAATAAGTTAATGCGCATATAGAGGATATTATTCTGTGTGTTCCAAAACCATATGAAGGATAACTAGCATTGAAAATCTGGAGATCTCAGTGTATGGCTGTTTACTTGTGTACTATTTATAACTTATGCACTCAATAGCCACTAAAGCAGGTCGTGTTTTCCATTCTTTTCCCATTCTATTACTAAAATATCTAGTGCACTGCATGCCTGATTGAATGGGAATGATGAAGAAGATGAAGAATATTTGCTTAGGTAATTAGCTATTCCCCTTCTCTGCTGATGGATTATATTAAAGCTGCGATATATCCTTTGGGATCTAATCTTGCAAGCAGTTTATCTTTGTACTATTACATGATTTTATGCTTGTCGGTGACAGACTTTATAGGTATATCATAACTTATAAAGTTCCTGAGATATCTCTGTTTTTTTACTGGTTCA

Fln Alignment:

Contig17911___MGSVGRVLELNTGTKIPLVGLGTAAMNQNPEDIKTAVATAIEVGYRHFDTASLYRSECPLGDALKDAFLKGLVAREEVFVTTKLWCGDLDDPVSALRTSLKNLQLDYVDLYLIHWPVRLRKEASFPIPKEEDFLPLDLESVWQGMEQCVHLGLTKAIGVSNFSSKKIGDLLSHAKIPPAVNQVEMHPLWQQQKLRDYCSKVNIHVSAWSPLGGPPKAQGSNGVIDNPVIEEIAEKYGKTTAQVILRWGLEQGVSVLPKSYNKGRITQNFQVFDWSLTAEDHSKISRLEQKKANRAQEMINSTTSPYKSVEELWDGEI
A9NPH6_______________MGSAGKVVELNAGTKIPLVGLGTAAINQNPEEIKTAVATALEVGYRHFDTASLYRSECALGDALKEACLKGLVAREEFFVTTKLWSEDLDDPVSALRTSLKNLKLEYVDLYLIHWPLRLRKGSSFPIPKEEDFLPLDLESAWKGMEQCVHLGLTKAIGVSNFSCKKIGDLLSHAKISPAVNQVEMHPLWQQKKLRDYCSKVNIHVSAWSPLGGAPNAQGSNGVMDNPVIKEIAEKHGKTTAQVILRWGLEQGISVLPKSYNKGRIAQNFQVFDWSLTAEDHSKISRLEQKKANRGEEVVNSTTSPYKSVEELWDGEI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
939		90		10	0.90298
957		10		90	0.90298
977	90		10		0.90298
988	10		90		0.90298
1058	9			90	0.999872
1059	90	9			0.999872
1061			90	9	0.999872
1391			10	90	0.90298
1393	90		10		0.90298
1405	90	10			0.90298
1432		85	14		0.993533
1433	83		16		0.994512
1441		25		75	0.996473
1463		75		25	0.996473
1473	25			75	0.996473
1589	25		75		0.996473
1590		25		75	0.996473
1592	75			25	0.996473
1648		33	66		0.997452
1649		33	66		0.997452
1650		33	66		0.997452
1651	66			33	0.997452
1675	14			85	0.993533
1698			16	33	1.0
1699			83	16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain