SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17899

Length: 2413 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene17899
ATGGGGAAACCAGTTAGTATCTCTATCCCATTTTACTACTGGTTTCGGGAGAGAGGATAAGCGAGTATCAAGCTTTGTTCATTCATTATAGTTAGTATCTCTATCCCATTTTTCTACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTAATTCATGATAGTTAGTATCTCTATCCCATTTTTCCACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTCATTCATTATTATATATACACATTTCATGCTGCTACTAATGGCAGTTACCCACCACTAAGTCCCCACAGGCAAAGGGTGCTGAAAACTTGTGAAGAAAGCAACAGCAACAGCAATGGCCAGAGGCAGAGGTGGAGGAGGTTTGTCTTATTTGTTGTGCAGGTTCATTAGTTCTACTGTAACACCATCTTCTTCTTCATCAGCTGTTATGAGGTCGCGGGCTTTCTCAAAAGTGGCAATGGTCAGAAACAATACAGTTAGACAATTCGGTTCAGCAGCAGAATCATTAGAAGAGCCTATCCAACCACCTGTGCAAGTAAAGTATAAACAACTTCTGATTGATGGACAGCTTGTTGATGCAGCATCAGGAAAAGAATTTCCAACTATTGATCCTCGAACGGGAGATGTGATTACTTATGTGGCTGAAGGTGATGTTGAAGATGTAAATAGGGCTGTTAAAGCTGCTAGGAAAGCTTTTGATCAGGGTCCTTGGCCCAAAATGACTGCTTATGAAAGGTCATGTATAATGTACCGCTTTGCAGATCTAGCAGAAAAGCACAGTGATGAAATTGCATATCTAGATGCATGGGACGGTGGGAAACCTATTGAGCAAGCACGCAATATTGATGTACCAGTATTGGCAAGGATAATGAGATACTATGCAGGTTGGGCCGATAAGATCCATGGATTAACAGTTCCAGCAGACGGACCTTATAATGTCCACACCTTGCATGAACCTATTGGAGTGGCAGGACAAATTGTTCCTTGGAATTTCCCCATTCCTATGTTTGCTTGGAAAATTGGCCCAGCACTTGCTTGTGGAAATACTGTTGTGTTGAAAACCGCAGAGCAAACACCATTATCTACTCTATATGCTGCAAAGCTTTTTTATGAGGCTGGACTTCCACCAGGTGTTCTGAATATAATTTCAGGATATGGTCCAACAGCGGGCGCAGCTATGGCAAATCACATGGATATTGATAAGATTGCTTTTACAGGATCAACTGAAACAGGCCAAAGTATTCTACAAGCAGCTTCCAGGAGCAACCTGAAGCCAGTGACATTAGAGCTTGGAGGAAAGTCACCATTTATTATATGTGAAGATGCTAATGTTGATGAGGCTGTTGAATATGCACATGTTGCCCTTTTCTTGAACCAGGGCCAATGTTGTGCTGCTGGATCTCGAACTTTTGTACATGAAAGTATTTATGATGAGTTTGTTGAAAAGGCACGCGACCGGGCCTTAAGACGTGTTGTTGGCGATCCTTTTAGAAAAGAAGTTGAACAAGGCCCACAGATAGACCAGGAACAGTTTAACAAAATTTTAAGATTAATTAAAGCTGGCAAAGAAGAAGGTGCGACACTTGTTGCAGGCGGTGAACGGATTGGCAACAGGGGATTCTATATACAACCTACAGTTTTTTCAGATGTTAAGGATGACATGGCCATAGCTAAATATGAAATCTTTGGACCTGTACAAACAATATTGAAGTTCAAAACCTTGGATGAGGTGATACAGCGAGCGAATGCTACTCATTATGGTTTGGCAGCAGGAATTTTCTCAAATAATGTACACACCATCAATACTCTGAGCAGGGCATTGCGGGTGGGGACTGTATGGGTCAACTGTTATTTTGTTTTTGATGCTGCCATTCCTTTTGGAGGCTATAAAATGAGCGGTTTTGGAAGAGAGAAGGGAATATATTGTCTTCAGAATTACTTGCAGGTGAAGTCTGTGGTGTCGACACTAGACAACCCGGCATGGCTTTAGTCTAGTGTATTCACTTCACTATTTGATTTCCCCATCTGTTGAACACTCCTCCAGACAGGATCAACGTTTTGTGCAATGTTTGAATTTCATTATTTTCTTATTTGAGTTCTTTAGGAGTAGATTGCTTGCACGAGATTACTGGTTCAAGACTAAAGATGTCCATACACATTATCAAATCAAGTTCCTGAGAATGTTATTTGTGTTATAAATAACTTTCCACCGTTATCCACACTTTATTTGTTAATCTAAATTAAAATGTATACCAGTTTAAAATCTGTATCTGTGTTAAAAAAAAGCCTTGATGATGAACCATGGTTCGAAAAGCATCGACTCATACTTAGTGGTTCGAAAAGCATCGACTTAAAAATATATGTAATGTGATTTACAGAGTTATGTTGAAAATTCTGTA

Ace file of the UniGene sp_v3.0_unigene17899 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	aldehyde dehydrogenase [Vitis pseudoreticulata]	-	-	0.0	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Aldehyde dehydrogenase	-	-	5.521e-38	-

Source	ECs	Term	Type	e value	Identity
Sma3	Aldehyde dehydrogenase (NAD(+)).	EC:1.2.1.3	-	1.025e-18	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycolysis / Gluconeogenesis	00010		1.025e-18	%
Sma3	Pentose and glucuronate interconversions	00040		1.025e-18	%
Sma3	Ascorbate and aldarate metabolism	00053		1.025e-18	%
Sma3	Fatty acid metabolism	00071		1.025e-18	%
Sma3	Valine, leucine and isoleucine degradation	00280		1.025e-18	%
Sma3	Lysine degradation	00310		1.025e-18	%
Sma3	Arginine and proline metabolism	00330		1.025e-18	%
Sma3	Histidine metabolism	00340		1.025e-18	%
Sma3	Tryptophan metabolism	00380		1.025e-18	%
Sma3	beta-Alanine metabolism	00410		1.025e-18	%
Sma3	Glycerolipid metabolism	00561		1.025e-18	%
Sma3	Pyruvate metabolism	00620		1.025e-18	%
Sma3	Chloroalkane and chloroalkene degradation	00625		1.025e-18	%
Sma3	Propanoate metabolism	00640		1.025e-18	%
Sma3	Limonene and pinene degradation	00903		1.025e-18	%
Sma3	Metabolic pathways	01100		1.025e-18	%
Sma3	Biosynthesis of secondary metabolites	01110		1.025e-18	%
Sma3	Retinal dehydrogenase.	EC:1.2.1.36	-	3.939e-17	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Retinol metabolism	00830		3.939e-17	%
Sma3	Metabolic pathways	01100		3.939e-17	%
Sma3	Betaine-aldehyde dehydrogenase.	EC:1.2.1.8	-	6.42e-23	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Glycine, serine and threonine metabolism	00260		6.42e-23	%

Source	Gene names
Sma3	ALD1; ALDH; ALDH10A9; ALDH1a; ALDH2; ALDH2A; ALDH2B; ALDH2B4; ALDH2B7; ALDH2C4; ALDH2a; ALDH2b; ALDH3; Aldh; Aldh 2A; Aldh1; Aldh2a; Aldh2b; At1g23800; At3g24503; At3g48000; At3g48170; BADH; BADH4; BBD1; BvBADH1; CHLREDRAFT_135609; F5O8.33; F5O8.35; GSVIV

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	mitochondrial matrix	GO:0005759	Cellular Component	-
Sma3	peroxisome	GO:0005777	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	aldehyde dehydrogenase (NAD) activity	GO:0004029	Molecular Function	-
Sma3	aldehyde dehydrogenase [NAD(P)+] activity	GO:0004030	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	betaine-aldehyde dehydrogenase activity	GO:0008802	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	GO:0016620	Molecular Function	-
Sma3	coniferyl-aldehyde dehydrogenase activity	GO:0050269	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	phenylpropanoid biosynthetic process	GO:0009699	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Succinic semialdehyde dehydrogenase	IPR010102	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase, C-terminal	IPR016163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G23800.1	ALDH2B7, ALDH2B aldehyde dehydrogenase 2B7 chr1:8412238-8414804 REVERSE LENGTH=534	71%
RefSeq	Arabidopsis thaliana	NP_564204.1	aldehyde dehydrogenase 2B7 [Arabidopsis thaliana]	71%
RefSeq	Populus trichocarpa	XP_002301540.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF6

Fln msg:

Fln protein: MARGRGGGGLSYLLCRFISSTVTPSSSSSAVMRSRAFSKVAMVRNNTVRQFGSAAESLEEPIQPPVQVKYKQLLIDGQLVDAASGKEFPTIDPRTGDVITYVAEGDVEDVNRAVKAARKAFDQGPWPKMTAYERSCIMYRFADLAEKHSDEIAYLDAWDGGKPIEQARNIDVPVLARIMRYYAGWADKIHGLTVPADGPYNVHTLHEPIGVAGQIVPWNFPIPMFAWKIGPALACGNTVVLKTAEQTPLSTLYAAKLFYEAGLPPGVLNIISGYGPTAGAAMANHMDIDKIAFTGSTETGQSILQAASRSNLKPVTLELGGKSPFIICEDANVDEAVEYAHVALFLNQGQCCAAGSRTFVHESIYDEFVEKARDRALRRVVGDPFRKEVEQGPQIDQEQFNKILRLIKAGKEEGATLVAGGERIGNRGFYIQPTVFSDVKDDMAIAKYEIFGPVQTILKFKTLDEVIQRANATHYGLAAGIFSNNVHTINTLSRALRVGTVWVNCYFVFDAAIPFGGYKMSGFGREKGIYCLQNYLQVKSVVSTLDNPAWL*

Protein Length: 553

Fln nts: ATGGGGAAACCAGTTAGTATCTCTATCCCATTTTACTACTGGTTTCGGGAGAGAGGATAAGCGAGTATCAAGCTTTGTTCATTCATTATAGTTAGTATCTCTATCCCATTTTTCTACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTAATTCATGATAGTTAGTATCTCTATCCCATTTTTCCACTGGTTTCGGGAGAGAGGATAAGGGAGTATCAAGCTTTGTTCATTCATTATTATATATACACATTTCATGCTGCTACTAATGGCAGTTACCCACCACTAAGTCCCCACAGGCAAAGGGTGCTGAAAACTTGTGAAGAAAGCAACAGCAACAGCA_-_ATGGCCAGAGGCAGAGGTGGAGGAGGTTTGTCTTATTTGTTGTGCAGGTTCATTAGTTCTACTGTAACACCATCTTCTTCTTCATCAGCTGTTATGAGGTCGCGGGCTTTCTCAAAAGTGGCAATGGTCAGAAACAATACAGTTAGACAATTCGGTTCAGCAGCAGAATCATTAGAAGAGCCTATCCAACCACCTGTGCAAGTAAAGTATAAACAACTTCTGATTGATGGACAGCTTGTTGATGCAGCATCAGGAAAAGAATTTCCAACTATTGATCCTCGAACGGGAGATGTGATTACTTATGTGGCTGAAGGTGATGTTGAAGATGTAAATAGGGCTGTTAAAGCTGCTAGGAAAGCTTTTGATCAGGGTCCTTGGCCCAAAATGACTGCTTATGAAAGGTCATGTATAATGTACCGCTTTGCAGATCTAGCAGAAAAGCACAGTGATGAAATTGCATATCTAGATGCATGGGACGGTGGGAAACCTATTGAGCAAGCACGCAATATTGATGTACCAGTATTGGCAAGGATAATGAGATACTATGCAGGTTGGGCCGATAAGATCCATGGATTAACAGTTCCAGCAGACGGACCTTATAATGTCCACACCTTGCATGAACCTATTGGAGTGGCAGGACAAATTGTTCCTTGGAATTTCCCCATTCCTATGTTTGCTTGGAAAATTGGCCCAGCACTTGCTTGTGGAAATACTGTTGTGTTGAAAACCGCAGAGCAAACACCATTATCTACTCTATATGCTGCAAAGCTTTTTTATGAGGCTGGACTTCCACCAGGTGTTCTGAATATAATTTCAGGATATGGTCCAACAGCGGGCGCAGCTATGGCAAATCACATGGATATTGATAAGATTGCTTTTACAGGATCAACTGAAACAGGCCAAAGTATTCTACAAGCAGCTTCCAGGAGCAACCTGAAGCCAGTGACATTAGAGCTTGGAGGAAAGTCACCATTTATTATATGTGAAGATGCTAATGTTGATGAGGCTGTTGAATATGCACATGTTGCCCTTTTCTTGAACCAGGGCCAATGTTGTGCTGCTGGATCTCGAACTTTTGTACATGAAAGTATTTATGATGAGTTTGTTGAAAAGGCACGCGACCGGGCCTTAAGACGTGTTGTTGGCGATCCTTTTAGAAAAGAAGTTGAACAAGGCCCACAGATAGACCAGGAACAGTTTAACAAAATTTTAAGATTAATTAAAGCTGGCAAAGAAGAAGGTGCGACACTTGTTGCAGGCGGTGAACGGATTGGCAACAGGGGATTCTATATACAACCTACAGTTTTTTCAGATGTTAAGGATGACATGGCCATAGCTAAATATGAAATCTTTGGACCTGTACAAACAATATTGAAGTTCAAAACCTTGGATGAGGTGATACAGCGAGCGAATGCTACTCATTATGGTTTGGCAGCAGGAATTTTCTCAAATAATGTACACACCATCAATACTCTGAGCAGGGCATTGCGGGTGGGGACTGTATGGGTCAACTGTTATTTTGTTTTTGATGCTGCCATTCCTTTTGGAGGCTATAAAATGAGCGGTTTTGGAAGAGAGAAGGGAATATATTGTCTTCAGAATTACTTGCAGGTGAAGTCTGTGGTGTCGACACTAGACAACCCGGCATGGCTTTAG___TCTAGTGTATTCACTTCACTATTTGATTTCCCCATCTGTTGAACACTCCTCCAGACAGGATCAACGTTTTGTGCAATGTTTGAATTTCATTATTTTCTTATTTGAGTTCTTTAGGAGTAGATTGCTTGCACGAGATTACTGGTTCAAGACTAAAGATGTCCATACACATTATCAAATCAAGTTCCTGAGAATGTTATTTGTGTTATAAATAACTTTCCACCGTTATCCACACTTTATTTGTTAATCTAAATTAAAATGTATACCAGTTTAAAATCTGTATCTGTGTTAAAAAAAAGCCTTGATGATGAACCATGGTTCGAAAAGCATCGACTCATACTTAGTGGTTCGAAAAGCATCGACTTAAAAATATATGTAATGTGATTTACAGAGTTATGTTGAAAATTCTGTA

Fln Alignment:

Contig17899___AMVRNNTVRQFGSAAESLEEPIQPPVQVKYKQLLIDGQLVDAASGKEFPTIDPRTGDVITYVAEGDVEDVNRAVKAARKAFDQGPWPKMTAYERSCIMYRFADLAEKHSDEIAYLDAWDGGKPIEQARNIDVPVLARIMRYYAGWADKIHGLTVPADGPYNVHTLHEPIGVAGQIVPWNFPIPMFAWKIGPALACGNTVVLKTAEQTPLSTLYAAKLFYEAGLPPGVLNIISGYGPTAGAAMANHMDIDKIAFTGSTETGQSILQAASRSNLKPVTLELGGKSPFIICEDANVDEAVEYAHVALFLNQGQCCAAGSRTFVHESIYDEFVEKARDRALRRVVGDPFRKEVEQGPQIDQEQFNKILRLIKAGKEEGATLVAGGERIGNRGFYIQPTVFSDVKDDMAIAKYEIFGPVQTILKFKTLDEVIQRANATHYGLAAGIFSNNVHTINTLSRALRVGTVWVNCYFVFDAAIPFGGYKMSGFGREKGIYCLQNYLQVKSVVSTLDNPAWL
A9NUF6_______________ASIRNDGIRRLGTAASALEEPIAPPVQVKHTQLLIDGQFVNAASGKTFPTFDPRTGDVIANVAEGDAPDVNRAVKAARKAFDVGPWPKMTAYERSCIMLRFADLLEKHNDEIAALETWDNGKPYEQASLVEVPMAVRLFRYYAGWADKIHGLTVPADGPYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNSIVLKSAEQTPLTALYAAKLFHEAGLPPGVLNIVSGFGPTAGAAIARHMDIDKVAFTGSTETGKAVLELASKSNLKPVTLELGGKSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFVHESIHDEFVEKAKARCLSRVVGDPFRKGVEQGPQIDQEQFNKILRYIKAGKESGAKLVTGGDQIGTKGFYIMPTIFSEVQDDMAIATDEIFGPVQSIIKFKTLDEVIKRANASRYGLAAGVFTQNIETANTLTRALRVGTVWVNCFDIFDAGIPFGGYKMSGTGREKGIYSLQNYLQVKAVVTPLKNPAWL

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
2062	11		88		0.999937
2286		72		27	1.0
2300	10		90		0.90298
2302	70			10	0.999998
2316			90	10	0.90298
2357	87	12			0.992554
2358		14		85	0.993533
2360	16	83			0.994512
2393	80	20			0.995493
2394		20	80		0.995493
2395	80	20			0.995493
2396		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain