SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17865

Length: 2006 nt

UniGene Fasta

>sp_v3.0_unigene17865
AAGGAAATTTCTGGGGAATGGGCCCTTTTCTCTTAGTTATTTTCTCATCTGTTGTGTAGCTGAAGCTCTGGTCCTTGTGATGCTCTGTGTTTCCCTTGCTGCGAAGGAAAGAATCGTTCAGGTTTAACGAGCAAGCCCAGGATGGCTACTCAAGATGTCGAGATGAAGGACTCAACAGCCGCGGTCTCCAATTCTTCTGCGCCATCGCCTCCTCCGGTTCTTACGCATCTGAAGAATGTGGCGGCTTTGATCGAGAAGGGGGTGGTTACAAAGGAGGTACGTCTGATGATCCGCGCTATCCGTCACATTATGACTCTGAGGAGGAAGATTAAGGCCCCCCACGTGTTGGCGTTTCTGAAAAACATTCTTCCTCCTGGTTCCGAGGTCGCTTCTCGGCTCTTACCATATTTTCCCAAGGAAGACGAGAAGGATATGGAAGTTGACAGTCCTTCATCGACAAGTCAAACTGTTCCATCTAAGCACACCATTCTTCCTGAGCTGGAAATTTTTGCGTACTTGTTAGTGTTGATATTCTTGATTGACCAAAAACAGTACAATGAGGCCAAAAATTGCTCTTCAGCTGCAATTTCTAGATTGAAGCAATTGAACCGAAGAACACTAGATGTTTTGGCTGCTAGATTATACTTTTATTACTCATATAGCTATGAGTTGACAGATTCCCTTGTTGAAATCAGAGGTACACTTCTTGCGTTACATCGAACTGCAACACTGCGACATGATGAGCTGGGTCAGGAAACATTGCTGAATCTCCTGCTTCGAAATTACTTGCACTACAACCTTTATGACCAGGCAGAGAAATTACGATCCAAAGCTCCGCGGTTTGAAGCTCATTCAAATCAACAATTTTGTCGGTATTTGTACTACTTGGGTAGAATACGAACAATACAGCTAGAGTACACAGATGCAAAAGAGAGTCTATTACAAGCAGCTCGTAAAGCGCCAGCATCTGCTCGGGGCTTCCGTATTCAGTGCAATAAATGGGCTGCAATTGTTCGCCTGCTTCTTGGTGAAATTCCAGAGAGAACAACTTTCATGCAGAATGGCATGAAGAAAGCTTTGAGTCCCTACTTTGAGCTTACCAATGCTGTTCGTATAGGCGATTTGGAACTTTTCCGTAGTGTGGCGGATAAATATTCAAAGACATTCAGTGCAGATAGAACACACAATTTGATTGTACGGTTACGACACAATGTGATAAGAACTGGACTTCGGAATATCAGCATTTCTTATTCCCGAATTTCTTTGGTTGATGTTGCTGCTAAATTGAGGCTCAACTCAGCCACTCCCGTGGCAGATGCTCAGAGCATTGTTGCAAAAGCAATTCGTGATGGTGCAATTGATGCAACTATTGACCATGCAAATGGGTGGATGCTCTCTAAAGAGACTGGTGATGTCTATTCCACAAATGAGCCTCAACTCGCATTCAATTCTCGAATAGCTTTCTGTCTTAACATGCACAATGAAGCTGTGAGGGCTTTGCGATTCCCTCCTAATGCACACAAAAAGGAGAGAGAAAGTGCTGAGAAACGCAGAGAAAGGCAGCAGCAGGAGCAAGAACTTGCAAAGCATATTGCCGAGGAAGATGACGATGAATTTTAGATTAAGGTATTCAAAAACATCAATTTGCAGAGTTGTTTTTGGACAGAGAACTTTAGGATTTATTGCAAAAGTGCTTTACGGCATAACTTGTGGAAACAGAAGTAATGTTGTCACCTACATATTTCATGAACCTGTACTAGACAGCAATTATGTTCTTTGACACTGAAAAGCCTTCCCATTTTTCTGTAGTTAGCTTGGCTAGAGAAATTCAAGGTTTATGGATTCCCATGTTTTGCTTAACTTATTTATAGATTCAATAATGGCTTGTTTTATTATGTTTCTCTATACAAACTTTCTGATAAGTTTTATTGTATGGTTTTCTGGCCAAACATGTCCAGAATTATATTTCTACAGATAAAATATAAGTTTAGTAGCTGGTCTCTCTC

Ace file of the UniGene sp_v3.0_unigene17865

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	RecName: Full=Probable 26S proteasome non-ATPase regulatory subunit 3; Short=26S proteasome subunit S3; AltName: Full=26S proteasome regulatory subunit RPN3; AltName: Full=Nuclear antigen 21D7 dbj\|BAA19252.1\| 21D7 [Nicotiana tabacum]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome regulatory subunit, C-terminal	IPR013586	-	-
Sma3	PCI/PINT associated module	IPR013143	-	-
Sma3	Proteasome component (PCI) domain	IPR000717	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G20200.1	EMB2719, HAP15 PAM domain (PCI/PINT associated module) protein chr1:7001409-7004154 REVERSE LENGTH=488	75%
RefSeq	Arabidopsis thaliana	NP_173447.1	26S proteasome regulatory subunit N3 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002306189.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKS7

Fln msg:

Fln protein: MATQDVEMKDSTAAVSNSSAPSPPPVLTHLKNVAALIEKGVVTKEVRLMIRAIRHIMTLRRKIKAPHVLAFLKNILPPGSEVASRLLPYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQLNRRTLDVLAARLYFYYSYSYELTDSLVEIRGTLLALHRTATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLELFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHKKERESAEKRRERQQQEQELAKHIAEEDDDEF*

Protein Length: 494

Fln nts: AAGGAAATTTCTGGGGAATGGGCCCTTTTCTCTTAGTTATTTTCTCATCTGTTGTGTAGCTGAAGCTCTGGTCCTTGTGATGCTCTGTGTTTCCCTTGCTGCGAAGGAAAGAATCGTTCAGGTTTAACGAGCAAGCCCAGG_-_ATGGCTACTCAAGATGTCGAGATGAAGGACTCAACAGCCGCGGTCTCCAATTCTTCTGCGCCATCGCCTCCTCCGGTTCTTACGCATCTGAAGAATGTGGCGGCTTTGATCGAGAAGGGGGTGGTTACAAAGGAGGTACGTCTGATGATCCGCGCTATCCGTCACATTATGACTCTGAGGAGGAAGATTAAGGCCCCCCACGTGTTGGCGTTTCTGAAAAACATTCTTCCTCCTGGTTCCGAGGTCGCTTCTCGGCTCTTACCATATTTTCCCAAGGAAGACGAGAAGGATATGGAAGTTGACAGTCCTTCATCGACAAGTCAAACTGTTCCATCTAAGCACACCATTCTTCCTGAGCTGGAAATTTTTGCGTACTTGTTAGTGTTGATATTCTTGATTGACCAAAAACAGTACAATGAGGCCAAAAATTGCTCTTCAGCTGCAATTTCTAGATTGAAGCAATTGAACCGAAGAACACTAGATGTTTTGGCTGCTAGATTATACTTTTATTACTCATATAGCTATGAGTTGACAGATTCCCTTGTTGAAATCAGAGGTACACTTCTTGCGTTACATCGAACTGCAACACTGCGACATGATGAGCTGGGTCAGGAAACATTGCTGAATCTCCTGCTTCGAAATTACTTGCACTACAACCTTTATGACCAGGCAGAGAAATTACGATCCAAAGCTCCGCGGTTTGAAGCTCATTCAAATCAACAATTTTGTCGGTATTTGTACTACTTGGGTAGAATACGAACAATACAGCTAGAGTACACAGATGCAAAAGAGAGTCTATTACAAGCAGCTCGTAAAGCGCCAGCATCTGCTCGGGGCTTCCGTATTCAGTGCAATAAATGGGCTGCAATTGTTCGCCTGCTTCTTGGTGAAATTCCAGAGAGAACAACTTTCATGCAGAATGGCATGAAGAAAGCTTTGAGTCCCTACTTTGAGCTTACCAATGCTGTTCGTATAGGCGATTTGGAACTTTTCCGTAGTGTGGCGGATAAATATTCAAAGACATTCAGTGCAGATAGAACACACAATTTGATTGTACGGTTACGACACAATGTGATAAGAACTGGACTTCGGAATATCAGCATTTCTTATTCCCGAATTTCTTTGGTTGATGTTGCTGCTAAATTGAGGCTCAACTCAGCCACTCCCGTGGCAGATGCTCAGAGCATTGTTGCAAAAGCAATTCGTGATGGTGCAATTGATGCAACTATTGACCATGCAAATGGGTGGATGCTCTCTAAAGAGACTGGTGATGTCTATTCCACAAATGAGCCTCAACTCGCATTCAATTCTCGAATAGCTTTCTGTCTTAACATGCACAATGAAGCTGTGAGGGCTTTGCGATTCCCTCCTAATGCACACAAAAAGGAGAGAGAAAGTGCTGAGAAACGCAGAGAAAGGCAGCAGCAGGAGCAAGAACTTGCAAAGCATATTGCCGAGGAAGATGACGATGAATTTTAG___ATTAAGGTATTCAAAAACATCAATTTGCAGAGTTGTTTTTGGACAGAGAACTTTAGGATTTATTGCAAAAGTGCTTTACGGCATAACTTGTGGAAACAGAAGTAATGTTGTCACCTACATATTTCATGAACCTGTACTAGACAGCAATTATGTTCTTTGACACTGAAAAGCCTTCCCATTTTTCTGTAGTTAGCTTGGCTAGAGAAATTCAAGGTTTATGGATTCCCATGTTTTGCTTAACTTATTTATAGATTCAATAATGGCTTGTTTTATTATGTTTCTCTATACAAACTTTCTGATAAGTTTTATTGTATGGTTTTCTGGCCAAACATGTCCAGAATTATATTTCTACAGATAAAATATAAGTTTAGTAGCTGGTCTCTCTC

Fln Alignment:

Contig17865___MATQDVEMKDSTXXXXXXXXXXXXXXLTHLKNVAALIEKGVVTKEVRLMIRAIRHIMTLRRKIKAPHVLAFLKNILPPGSEVASRLLPYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQLNRRTLDVLAARLYFYYSYSYELTDSLVEIRGXXXXXXXXXXXXXDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLELFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHXXXXXXXXXXXXXXXXXXXXXXHIAEEDDDEF
B8LKS7_______________MATQDVEMKDSAAAPSNSSAPSPPPVLTHLKNVSALIEKGVVTKEVRLMIRAIRHIMTLRRKIKASHVLAFLKQLLPPGSEVASRLLLYFPKEDEKDMEVDSPSSTSQTVPSKHTILPELEIFAYLLVLIFLIDQKQYNEAKNCSSAAISRLKQFNRRTLDVLAARLYFYYSYSYELTDSLVEIRGTLLALHRTATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLYYLGRIRTIQLEYTDAKESLLQAARKAPASARGFRIQCNKWAAIVRLLLGEIPERTTFMQNGMKKALSPYFELTNAVRIGDLDLFRSVADKYSKTFSADRTHNLIVRLRHNVIRTGLRNISISYSRISLVDVAAKLRLNSATPVADAQSIVAKAIRDGAIDATIDHANGWMLSKETGDVYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNAHKKERESAEKRRERQQQEQELAKHIAEEDDDEF

SNPs (tot: 18)

Position	A %	C %	G %	T %	Probability
77		87		12	0.992554
136	87		12		0.992554
198	12			87	0.992554
201			87	12	0.992554
267			75	25	0.996473
344		50		25	0.995533
979	2		93		0.983471
997	90		4	2	0.9465
1213	92			7	0.999532
1257		93		6	0.999364
1656		8		88	0.999999
1701		85		14	1.0
1715	6		93		0.99903
1716	93	6			0.99903
1718	90		3	6	0.996531
1719		93		6	0.99903
1794	8	92			0.999718
1892		10		90	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain