SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17859

Length: 2353 nt

UniGene Fasta

>sp_v3.0_unigene17859
ATGTTGCCCGTTAACTGTAACCGATTGTTCATCCCAAATCCGCCGGTAGGAGCAAAGGTGAAAAGGATTCGCTTGACAGCGAGGAGATCGGGATTGGTGGAAGCCGAGGTCGAAATACATTTAAAGATCAGTGGGAGAGGAGGATACCATTCGTATCGGATCGGCCGAGGGAAAGAGAGCCGATGGTTTGTTGGAGGCGAGAGACATAGGCACTTGCAATAATTTTTTCAAGAGCGGCAAGTCCGGCTACCAGAGAAATCCGGCGACGGGGCGGAGGATTTTCTTGATTTTCTAGTATTTCTTGCATTTTGAGTGAATTTTGAGGGTGCTGAATGTGTGGGAGAGATTTCTGGTAATCTTTTTGTTATTTTACGAGGATATTGTAGCCGTGGGACCCCAGGCGGCTTACTGGTAAAAAAATCGAGTTTGAAAAGGCAGACGACGGGCTTTTCCTTTTTCTCCTTTTCTGACGGCCCCGAACAGGAGTTTGGCCAAGTTTGCGAAGGAATTTGGACTGGCCTCGCGATATCTTTGAGTTCTTTAGATTAAGGACGGATTCGCTCTTCGCTCGGCGGTTAGGAAATCATTGAAGGAGCCTGTGAAGCGGCTTTTCAATTTGATAACGGAAGAATGTCGTCGACCTTGAGCTACAGAGGTCATGAAGCTCCCTCTAACAGTGATGAGTACTCTCCTAAGCCAGAAAAGCCGTGGTCTATTATCAGGCCAGTAGATTATTTGCTCAGGGAGCAGCGGCTGCTGTTTATTTTGATAGGAATCGCCATCGCATCGACTTTCTTTATCCTTCAGCCTGGTTTTTTGGCTTCTAATGTTAATGAAAGTGGAAGGTTTGTGCCCGACAAACCTCATCGGATTGTTTATGAGACTCCTGTTTCTCGGTTTGCTCAGTATCATTCGGGTTCGATGGTGAATTCGGGGGCTAAAGTGCCCCTAGGTTTGAAGAGAAAGTCCCTGCGAGTTGTCGTGACGGGTGGAGCTGGCTTTGTTGGCAGTCATCTAGTTGACAGGCTCATGGCAAGAGGCGACAGTGTTATTGTTGTCGACAATTTCTTCACAGGAAGGAAGGAGAATGTTTTGCATCATTTTGGCAATCCGAGGTTTGAACTGATAAGGCATGATGTTGTGGAACCCTTATTGTTGGAGGTTGATCAGATCTACCATTTGGCTTGCCCCGCTTCCCCTGTGCATTACAAACACAATCCTGTGAAGACTATCAAAACTAATGTTGTGGGAACCTTGAACATGCTCGGACTTGCCAAGCGTGTTGGGGCACGCTTTTTGCTTACAAGTACCAGTGAGGTTTATGGAGATCCTCTTGAACATCCTCAAACTGAAGCTTACTGGGGCAATGTTAATCCCATCGGAGTCCGCAGTTGCTATGATGAGGGTAAGAGAACAGCCGAAACTCTGACTATGGATTATCACAGGGGAGCAAATGTTGAGGTTCGGATTGCTCGAATTTTCAATACATACGGTCCGCGAATGTGCCTTGATGATGGTCGGGTTGTAAGTAATTTTGTTGCTCAGGCTTTGCGCAAGGAGCCTTTGACAGTCTATGGAGATGGGAAACAGACACGGAGTTTCCAGTTCGTTTCTGATCTGGTTGAAGGCCTTATGCGACTTATGGAGGGGGAACATGTTGGTCCTTTCAATCTTGGGAATCCTGGGGGAATTTACAATGTTAGAACTAGCACAGGTTGTGAAGGAGACAATAGATACTAATGCAAAGATTGAGTTCAGACCAAACACAGAAGATGATCCACACAAGAGGAAACCTGATATTACTAAAGCAAAAGATCTACTTGGCTGGGAACCCAAAGTGTCCCTAAGAAAGGGTCTTCCCCTGATGGTCGAGGACTTCCGTCGTCGTGTTTTTGGAGATGAGAAGGATGGGAGTGTAAAGAACAAACATACCTCTCTGAATGACAGCTGAAATGTCAAAATTTGTCTAATTGCATAACGTGGCACTGTTCACATGCAAGGGCAGATCTTGTGCACATGTCAGAGTTGATGAGAGGCCCGACTAGAGTTCTTTTAGGTTAGGTTTATTCATTCATTTTTGGCATATCTCCTATCTCAGTTTCTATAGAATATGTTTGCATGATTTATATTCTGAAGTTATGTAATAACATTAGGCTCTCGAGAATTTGATCAGTTCGAATCTCTTATTTGGCATTACAAATCTTTTTGTCAAAGTGCCTTATTCCTGGTAGGCATGAAGAGAAAACTCTTGAATTGAAGCAAATTACATATCCCTGGTGTCCGTTTTCTTGATTTCCATATATGTATGGTTCATTGTTGTCAATGTTTGAAGCACTTACAAGAAGCCTCTGAA

Ace file of the UniGene sp_v3.0_unigene17859

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	UDP-glucuronic acid decarboxylase 2 [Populus tomentosa]	-	-	0.0	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Dtdp-glucose 4-6-dehydratase, putative	-	-	1.718e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	1.625e-31	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		1.625e-31	%
Sma3	Amino sugar and nucleotide sugar metabolism	00520		1.625e-31	%
Sma3	Metabolic pathways	01100		1.625e-31	%
Sma3	dTDP-glucose 4,6-dehydratase.	EC:4.2.1.46	-	5.101e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Polyketide sugar unit biosynthesis	00523	5.101e-07	%
Sma3	Metabolic pathways	01100	5.101e-07	%
Sma3	Biosynthesis of secondary metabolites	01110	5.101e-07	%

Source	Gene names
Sma3	AT2G47650; AT3G46440; At2g28760; At3g46440; At3g53520; At3g62830; At5g59290; B1012D10.32; CHLREDRAFT_135101; D18; DGD1; DGD2; F18L15.160; F26K9_260; F4P12.220; F4P12_220; GAD1; GSVIVT00018513001; GSVIVT00023112001; GSVIVT00024364001; GSVIVT00028008001; GS

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	-
Sma3	coenzyme binding	GO:0050662	Molecular Function	-
Sma3	cellular metabolic process	GO:0044237	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G62830.1	UXS2, ATUXS2, AUD1 NAD(P)-binding Rossmann-fold superfamily protein chr3:23232539-23235353 FORWARD LENGTH=445	76%
RefSeq	Arabidopsis thaliana	NP_191842.1	UDP-glucuronic acid decarboxylase [Arabidopsis thaliana]	76%
RefSeq	Populus trichocarpa	XP_002301480.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NV03

Fln msg: Overlapping hits, possible frame ERROR between 1686 and 1673,

Fln protein: MSSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFILIGIAIASTFFILQPGFLASNVNESGRFVPDKPHRIVYETPVSRFAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNxxxxxxEFTMLELAQVVKETIDTNAKIEFRPNTEDDPHKRKPDITKAKDLLGWEPKVSLRKGLPLMVEDFRRRVFGDEKDGSVKNKHTSLNDS*

Protein Length: 442

Fln nts: ATGTTGCCCGTTAACTGTAACCGATTGTTCATCCCAAATCCGCCGGTAGGAGCAAAGGTGAAAAGGATTCGCTTGACAGCGAGGAGATCGGGATTGGTGGAAGCCGAGGTCGAAATACATTTAAAGATCAGTGGGAGAGGAGGATACCATTCGTATCGGATCGGCCGAGGGAAAGAGAGCCGATGGTTTGTTGGAGGCGAGAGACATAGGCACTTGCAATAATTTTTTCAAGAGCGGCAAGTCCGGCTACCAGAGAAATCCGGCGACGGGGCGGAGGATTTTCTTGATTTTCTAGTATTTCTTGCATTTTGAGTGAATTTTGAGGGTGCTGAATGTGTGGGAGAGATTTCTGGTAATCTTTTTGTTATTTTACGAGGATATTGTAGCCGTGGGACCCCAGGCGGCTTACTGGTAAAAAAATCGAGTTTGAAAAGGCAGACGACGGGCTTTTCCTTTTTCTCCTTTTCTGACGGCCCCGAACAGGAGTTTGGCCAAGTTTGCGAAGGAATTTGGACTGGCCTCGCGATATCTTTGAGTTCTTTAGATTAAGGACGGATTCGCTCTTCGCTCGGCGGTTAGGAAATCATTGAAGGAGCCTGTGAAGCGGCTTTTCAATTTGATAACGGAAGA_-_ATGTCGTCGACCTTGAGCTACAGAGGTCATGAAGCTCCCTCTAACAGTGATGAGTACTCTCCTAAGCCAGAAAAGCCGTGGTCTATTATCAGGCCAGTAGATTATTTGCTCAGGGAGCAGCGGCTGCTGTTTATTTTGATAGGAATCGCCATCGCATCGACTTTCTTTATCCTTCAGCCTGGTTTTTTGGCTTCTAATGTTAATGAAAGTGGAAGGTTTGTGCCCGACAAACCTCATCGGATTGTTTATGAGACTCCTGTTTCTCGGTTTGCTCAGTATCATTCGGGTTCGATGGTGAATTCGGGGGCTAAAGTGCCCCTAGGTTTGAAGAGAAAGTCCCTGCGAGTTGTCGTGACGGGTGGAGCTGGCTTTGTTGGCAGTCATCTAGTTGACAGGCTCATGGCAAGAGGCGACAGTGTTATTGTTGTCGACAATTTCTTCACAGGAAGGAAGGAGAATGTTTTGCATCATTTTGGCAATCCGAGGTTTGAACTGATAAGGCATGATGTTGTGGAACCCTTATTGTTGGAGGTTGATCAGATCTACCATTTGGCTTGCCCCGCTTCCCCTGTGCATTACAAACACAATCCTGTGAAGACTATCAAAACTAATGTTGTGGGAACCTTGAACATGCTCGGACTTGCCAAGCGTGTTGGGGCACGCTTTTTGCTTACAAGTACCAGTGAGGTTTATGGAGATCCTCTTGAACATCCTCAAACTGAAGCTTACTGGGGCAATGTTAATCCCATCGGAGTCCGCAGTTGCTATGATGAGGGTAAGAGAACAGCCGAAACTCTGACTATGGATTATCACAGGGGAGCAAATGTTGAGGTTCGGATTGCTCGAATTTTCAATACATACGGTCCGCGAATGTGCCTTGATGATGGTCGGGTTGTAAGTAATTTTGTTGCTCAGGCTTTGCGCAAGGAGCCTTTGACAGTCTATGGAGATGGGAAACAGACACGGAGTTTCCAGTTCGTTTCTGATCTGGTTGAAGGCCTTATGCGACTTATGGAGGGGGAACATGTTGGTCCTTTCAATxxxxxxxxxxxxxxxxxxGAATTTACAATGTTAGAACTAGCACAGGTTGTGAAGGAGACAATAGATACTAATGCAAAGATTGAGTTCAGACCAAACACAGAAGATGATCCACACAAGAGGAAACCTGATATTACTAAAGCAAAAGATCTACTTGGCTGGGAACCCAAAGTGTCCCTAAGAAAGGGTCTTCCCCTGATGGTCGAGGACTTCCGTCGTCGTGTTTTTGGAGATGAGAAGGATGGGAGTGTAAAGAACAAACATACCTCTCTGAATGACAGCTGA___AATGTCAAAATTTGTCTAATTGCATAACGTGGCACTGTTCACATGCAAGGGCAGATCTTGTGCACATGTCAGAGTTGATGAGAGGCCCGACTAGAGTTCTTTTAGGTTAGGTTTATTCATTCATTTTTGGCATATCTCCTATCTCAGTTTCTATAGAATATGTTTGCATGATTTATATTCTGAAGTTATGTAATAACATTAGGCTCTCGAGAATTTGATCAGTTCGAATCTCTTATTTGGCATTACAAATCTTTTTGTCAAAGTGCCTTATTCCTGGTAGGCATGAAGAGAAAACTCTTGAATTGAAGCAAATTACATATCCCTGGTGTCCGTTTTCTTGATTTCCATATATGTATGGTTCATTGTTGTCAATGTTTGAAGCACTTACAAGAAGCCTCTGAA

Fln Alignment:

Contig17859___MSSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFILIGIAIASTFFILQPGFLASNVNESGRFVPDKPHRIVYETPVSRFAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEHVGPFNxxxxxEFTMLELAQVVKETIDTNAKIEFRPNTEDDPHKRKPDITKAKDLLGWEPKVSLRKGLPLMVEDFRRRVFGDEKDGSVKNKHTSLNDS
A9NV03_______________MTSTLSYRGHEAPSNSDEYSPKPEKPWSIIRPVDYLLREQRLLFIFIGIAIASMFFILQPGFFASNVDENARFVPDQHHRVVYETPLSRVAQYHSGSMVNSGAKVPLGLKRKSLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVLHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKHNPVKTIKTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLEHPQTEAYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCLDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMRLMEGEHVGPFNxxxxxEFTMLELAQVVKETIDPNAKIEFRPNTEDDPHKRKPDITKAKDLLGWQPKVSLRKGLPLMVEDFRRRVFGDEKDGSIKNKHTSLNDS

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
235	20			80	0.995493
239			20	80	0.995493
523	33			66	0.997452
524	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain