SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17842

Length: 1434 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17842

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Splicing factor-like protein n=3 Tax=Vitis RepID=Q6R4Q7_VITRI	-	-	0.0	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Sma3	Arginine/serine-rich splicing factor RSP41	-	-	1.795e-16	-

Source	Gene names
Sma3	AT2G46610; AT3G61860; AT4G25500; AT4g25500; AT5G52040; At2g46610; At3g61860; At4g25500; At5g52040; F21F14.30; GSVIVT00008658001; GSVIVT00026247001; H0716A07.4; M7J2.130; OSJNBa0020P07.8; Os02g0122800; Os04g0118900; OsI_05650; OsI_14641; OsJ_05182; OsJ_135

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	spliceosomal complex	GO:0005681	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	nuclear mRNA splicing, via spliceosome	GO:0000398	Biological Process	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Ribosomal RNA adenine methylase transferase	IPR001737	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G52040.2	ATRSP41, RS41, At-RS41 RNA-binding (RRM/RBD/RNP motifs) family protein chr5:21131081-21133318 FORWARD LENGTH=357	67%
RefSeq	Arabidopsis thaliana	NP_851174.1	arginine/serine-rich-splicing factor RSP41 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002322436.1	predicted protein, partial [Populus trichocarpa]	69%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPT2

Fln msg: Warning!, your query overlaps and the subject is separated, and overlapping frame ERROR between 1046 and 732,

Fln protein: MKPLYCGNIEYEARQSEIERLFGKYGRVERVDMKSGYAFIYMEDEQDAEDAIRGLDDSKFGRQRRRLSVEWKKPADRGFRRSEDGRRSVTGLKPTKTLFVINFDSYNTKARDLERHFEPYGKVLNVRIRRNFAFVQYESQDEATKALDSTNMSKILDRVIRVAYAxxREDGDRRDGHSSPIRRGRYGRxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPDNGRVSSPVHERDRRSASPVYAHRPKRNSPDNGRVSSPVHERDRSRSPVRHSRRQTGPSIITQNNS*

Protein Length: 368

Fln nts: CGTCGTGACCTTGGCTATCACGCATCGTAGGTTTCTGCTATTCTATCTCTCTGTGTTGGGCGTGGGCGATTAACCTCGCTTATCGATTCATTCGGCCGAGCCATAAGTGCCAGTACGAAAGCAACAGGGGTGTTCAGTGCAAAGTGAGGATTAGCG_-_ATGAAGCCATTGTACTGTGGAAACATAGAGTACGAGGCTCGGCAGTCAGAAATTGAGCGTTTATTTGGCAAATATGGAAGAGTCGAAAGGGTCGATATGAAATCAGGTTATGCTTTCATCTACATGGAAGATGAGCAAGATGCCGAGGATGCAATACGAGGGCTTGATGATTCAAAATTTGGCAGGCAACGGCGTCGGCTAAGCGTGGAGTGGAAGAAGCCTGCTGATCGAGGTTTCCGCCGATCTGAGGATGGAAGAAGGTCTGTTACAGGTTTGAAGCCAACGAAGACATTATTTGTGATTAACTTTGACTCATACAACACCAAAGCTAGGGACCTTGAAAGGCATTTTGAGCCTTATGGCAAAGTGCTAAATGTGAGAATTAGAAGGAATTTTGCATTTGTTCAGTATGAATCACAAGATGAAGCAACGAAAGCTCTGGACTCCACAAATATGAGCAAAATTTTAGATAGGGTTATAAGGGTAGCATATGCTxxxxxxCGCGAGGATGGTGATAGAAGAGATGGACATTCGAGCCCCATTCGAAGAGGTCGGTATGGCAGAGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCAGTCCAGATAATGGAAGAGTTTCAAGCCCTGTTCATGAACGGGACCGCAGGTCTGCAAGTCCTGTTTATGCTCATCGCCCAAAGAGGAACAGTCCAGATAACGGAAGAGTTTCTAGCCCTGTTCATGAACGGGACCGAAGCCGATCACCAGTGAGGCACTCAAGGAGGCAGACAGGGCCATCTATAATCACACAGAATAATTCTTGA___AGTCACTCTACCATGAGGCAATGGAGATTGTATGAAGAAATATTACTATTGCTCAGGCAGTTGTTAGAAACTTACACAACTATTTTGGTCGTTTAACTGTATATAGTTATTTGGCTAGTTAGTTTGACCAAACCTGATTATATTTTGTTAAACAGTTTCTAGAAATTTACACAATAAACGTTTG

Fln Alignment:

Contig17842___MKPLYCGNIEYEARQSEIERLFGKYGRVERVDMKSGYAFIYMEDEQDAEDAIRGLDDSKFGRQRRRLSVEWKKPADRGFRRSEDGRRSVTGLKPTKTLFVINFDSYNTKARDLERHFEPYGKVLNVRIRRNFAFVQYESQDEATKALDSTNMSKILDRVIRVAYAxREDGDRRDGHSSPIRRGRYGRASEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVSSPVHERDRSRSPVRHSRRQTGPSIITQNN
B8LPT2_______________MKPLYCGNVEYETRQSEIERLFGKYGKVDRVDMKSGFAFIYMEDEQDAEDAIRGLDSTEFGTQRRRLSVEWTKNADRGVRRSEDGRRSVTDLKPTKTLFVINFDSYNTKVEDIERHFEPYGKLLNVRIRRNFAFVQYELQEDATKALESTHLSKMLDKVLTVKYAxREDGDRRGRRSSPIRRGRYSRAGEDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRVASPVHEQDRSRSPMRQSR----PSIMLNHS

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
358		20		80	0.995493
408	12		87		0.992554
437			88	11	0.923564
438		88	11		0.923564
439		88		11	0.923564
638	87		12		0.992554
645	12		87		0.992554
649	87			12	0.992554
666		14		85	0.993533
667	28		71		1.0
668		14	71	14	0.984337
670			83	16	0.994512
707	25		75		0.996473
710	25		75		0.996473
711			75	25	0.996473
878	33		66		0.997452
881	66			33	0.997452
882			66	33	0.997452
1137	85		14		0.993533
1138			14	14	0.984337
1140			14	85	0.993533
1141		85	14		0.993533
1299	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain