SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17827

Length: 2061 nt

UniGene Fasta

>sp_v3.0_unigene17827
ATATATCAGTTGAGGCATCAAGTTTTAGTGGGAGCAATCACAACACCCCCGTTTTCACCATTTCAACGAGCTTTCTTCATCACTAAAGAAGAAGGTTACATAGCGAATACGTAAAGAGGAACTCGGAGGAATTCTGAAACCTGCCTCAGACTTGGAGGCCGCTGCAAACGCGAAGGAAAAATTGAAGGAGAAACATCAGCTCCCCAAAGAATCTAACAGAATGGTGAAGCATGGCGAGGGTTTGCGCCAGTATTACCTTCAACATATTCACGATCTCCAGCTCCAGGTCCGTCAGAAGACGCACAATCTCAACCGTCTTGAAGCCCAGCGGAACGATCTTAATTCCAAAGTGAGAGCACTGAGGGAGGAATTACAGTTGCTCCAGGAACCGGGATCGTATGTTGGTGAAGTTGTTAAAGTTATGGGGAAGTCTAAAGTTTTGGTTAAGGTGCATCCTGAAGGAAAGTATGTAGTTGATGTAGACAAGAACATTGACATAACAAAAATCACACCTTCTACAAGAGTAGCTCTTCGTAATGATAGCTACGTGCTTCATTTGATTTTGCCTAGCAAAGTAGACCCGTTGGTCAACCTGATGAAGGTGGAGAAAGTGCCGGATTCTACATATGACATGATTGGAGGACTTGACCAACAGATTAAGGAAATCAAAGAGGTTATCGAGCTTCCTATCAAGCATCCAGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTACTGTTGTATGGACCCCCTGGCACTGGAAAGACATTGCTTGCAAGGGCAGTTGCTCATCACACAGACTGCACCTTTATTAGAGTTTCAGGTTCTGAATTGGTTCAGAAGTACATAGGTGAAGGATCAAGGATGGTTCGTGAGCTTTTTGTTATGGCAAGAGAACATGCTCCCTCGATTATATTTATGGATGAAATTGACAGTATAGGATCTGCTCGAATGGAGTCTGGCACTGGTAATGGTGATAGTGAAGTCCAGCGAACTATGCTTGAGCTCCTTAATCAACTTGATGGCTTTGAGGCATCTAATAAGATTAAGGTTCTAATGGCTACAAACCGGATAGATATTCTTGATCAAGCACTTCTTCGACCTGGTAGGATTGACAGGAAAATTGAATTTCCTAATCCTAATGAAGAGTCTCGTTTTGACATTCTGAAAATCCACTCAAGAAAAATGAATCTAATGCGGGGCATCGATCTAAAGAAAATTGCTGAAAAAATGAGTGGTGCATCAGGTGCAGAGCTTAAGGCTGTATGCACAGAAGCTGGGATGTTTGCATTGCGGGAGCGACGTGTCCATGTTACACAAGAAGATTTTGAAATGGCTGTAGCTAAGGTTATGAAAAAGGAAACAGAGAAGAACATGTCACTGAGGAAACTATGGAAGTAAGGAAAGGATCAGTGGATTCGTTGGTTCAATATATCAAGCTACTGTGTGTATTTCAGTGGGTTAAACATGTCCAAGTGGTTGTATTACTTGCGATGGCAACATGGAAAATAAGTGGATATTTTGCAAGTGAAATTTGTTTCTAAATTCATTTTGGGCTTGAAGATGCCTTGGTCTATATATTCTCTGCGGGAAGCTTGGACTTCGAATCAAAAAATTTAGTTAATTTCCAAAGCACAAAAACATCCTCATCTCTTATTTTAGCAAGAATTAGAAATGTGGTTATAGTTATTGTTGAATATCATGTCAGATATGGCAGTGCTTTTCAAATTACGGTTTGGAACTTTCTCCCAGAGATGCATATAGTGTTGCACCTTTGTAAGAATTTTAAACGTGATTTCGTTTTGAGTTAGCAAGATGCAGCACTGAAATGTAGTATTCTGGTATTGGATGAGCTAGTTATTAGTGTTTAGGCCAGACTACTGCTATTTAAATCAGTGTCTGTACTATGTAGTAACTTCTTTGGAAAAGATGGTATATTAGGTGATAAATACAAAATGGTGTTATAGGCCTACCCTTTTCTCATATGGAAATTTATATTTAAGAAGAAACTCTTGATACTAGTGGTGTTTTTTCGAGCCAACTTAACACCCTTA

Ace file of the UniGene sp_v3.0_unigene17827

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit 8 n=3 Tax=Spermatophyta RepID=Q9M613_PINTA	-	-	94%
FL-Next	sp=26S protease regulatory subunit 8 homolog A; Arabidopsis thaliana (Mouse-ear cress).	-	-	95%
Sma3	26S proteasome regulatory subunit 8	-	-	-

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	protein catabolic process	GO:0030163	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	26S proteasome subunit P45	IPR005937	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G19990.1	RPT6A, ATSUG1 regulatory particle triple-A ATPase 6A chr5:6752144-6754918 FORWARD LENGTH=419	95%
RefSeq	Arabidopsis thaliana	NP_568389.1	regulatory particle triple-A ATPase 6A [Arabidopsis thaliana]	95%
RefSeq	Populus trichocarpa	XP_002315825.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9C5U3

Fln msg: your sequence is shorter than subject: 396 - 419

Fln protein: MVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*

Protein Length: 397

Fln nts: ATATATCAGTTGAGGCATCAAGTTTTAGTGGGAGCAATCACAACACCCCCGTTTTCACCATTTCAACGAGCTTTCTTCATCACTAAAGAAGAAGGTTACATAGCGAATACGTAAAGAGGAACTCGGAGGAATTCTGAAACCTGCCTCAGACTTGGAGGCCGCTGCAAACGCGAAGGAAAAATTGAAGGAGAAACATCAGCTCCCCAAAGAATCTAACAGA_-_ATGGTGAAGCATGGCGAGGGTTTGCGCCAGTATTACCTTCAACATATTCACGATCTCCAGCTCCAGGTCCGTCAGAAGACGCACAATCTCAACCGTCTTGAAGCCCAGCGGAACGATCTTAATTCCAAAGTGAGAGCACTGAGGGAGGAATTACAGTTGCTCCAGGAACCGGGATCGTATGTTGGTGAAGTTGTTAAAGTTATGGGGAAGTCTAAAGTTTTGGTTAAGGTGCATCCTGAAGGAAAGTATGTAGTTGATGTAGACAAGAACATTGACATAACAAAAATCACACCTTCTACAAGAGTAGCTCTTCGTAATGATAGCTACGTGCTTCATTTGATTTTGCCTAGCAAAGTAGACCCGTTGGTCAACCTGATGAAGGTGGAGAAAGTGCCGGATTCTACATATGACATGATTGGAGGACTTGACCAACAGATTAAGGAAATCAAAGAGGTTATCGAGCTTCCTATCAAGCATCCAGAACTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTACTGTTGTATGGACCCCCTGGCACTGGAAAGACATTGCTTGCAAGGGCAGTTGCTCATCACACAGACTGCACCTTTATTAGAGTTTCAGGTTCTGAATTGGTTCAGAAGTACATAGGTGAAGGATCAAGGATGGTTCGTGAGCTTTTTGTTATGGCAAGAGAACATGCTCCCTCGATTATATTTATGGATGAAATTGACAGTATAGGATCTGCTCGAATGGAGTCTGGCACTGGTAATGGTGATAGTGAAGTCCAGCGAACTATGCTTGAGCTCCTTAATCAACTTGATGGCTTTGAGGCATCTAATAAGATTAAGGTTCTAATGGCTACAAACCGGATAGATATTCTTGATCAAGCACTTCTTCGACCTGGTAGGATTGACAGGAAAATTGAATTTCCTAATCCTAATGAAGAGTCTCGTTTTGACATTCTGAAAATCCACTCAAGAAAAATGAATCTAATGCGGGGCATCGATCTAAAGAAAATTGCTGAAAAAATGAGTGGTGCATCAGGTGCAGAGCTTAAGGCTGTATGCACAGAAGCTGGGATGTTTGCATTGCGGGAGCGACGTGTCCATGTTACACAAGAAGATTTTGAAATGGCTGTAGCTAAGGTTATGAAAAAGGAAACAGAGAAGAACATGTCACTGAGGAAACTATGGAAGTAA___GGAAAGGATCAGTGGATTCGTTGGTTCAATATATCAAGCTACTGTGTGTATTTCAGTGGGTTAAACATGTCCAAGTGGTTGTATTACTTGCGATGGCAACATGGAAAATAAGTGGATATTTTGCAAGTGAAATTTGTTTCTAAATTCATTTTGGGCTTGAAGATGCCTTGGTCTATATATTCTCTGCGGGAAGCTTGGACTTCGAATCAAAAAATTTAGTTAATTTCCAAAGCACAAAAACATCCTCATCTCTTATTTTAGCAAGAATTAGAAATGTGGTTATAGTTATTGTTGAATATCATGTCAGATATGGCAGTGCTTTTCAAATTACGGTTTGGAACTTTCTCCCAGAGATGCATATAGTGTTGCACCTTTGTAAGAATTTTAAACGTGATTTCGTTTTGAGTTAGCAAGATGCAGCACTGAAATGTAGTATTCTGGTATTGGATGAGCTAGTTATTAGTGTTTAGGCCAGACTACTGCTATTTAAATCAGTGTCTGTACTATGTAGTAACTTCTTTGGAAAAGATGGTATATTAGGTGATAAATACAAAATGGTGTTATAGGCCTACCCTTTTCTCATATGGAAATTTATATTTAAGAAGAAACTCTTGATACTAGTGGTGTTTTTTCGAGCCAACTTAACACCCTTA

Fln Alignment:

Contig17827___KHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALRXXXXXXXXPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDVDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMSGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKETEKNMSLRKLWK
Q9C5U3_______________KQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRFDILKIHSRKMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRVHVTQEDFEMAVAKVMKKDTEKNMSLRKLWK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
545		8		91	0.999766
725	2		93	4	0.973796
859	10			90	0.90298
860		10	90		0.90298
862	90			10	0.90298
863	11		88		0.923564
864		11	88		0.923564
867		88		11	0.923564
908			87	12	0.992554
1115	80			20	0.995493
1213		42		57	1.0
1500	53		46		1.0
1596	45		54		1.0
1616		71		28	1.0
1978		5		94	0.998578
2015	75	25			0.996473
2017		75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain