SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17826

Length: 2059 nt

UniGene Fasta

>sp_v3.0_unigene17826
TGAAGACACTTTGAATCTCAATGCTCAAGAAAAGGTATCAACACAGACCAAAAACGGAACACTTTGAATCCTTACCACGTAACAGTAAAGGCGACCAGAGGCTCATGTAGGGCATGTCACGTGGGTGAAGATCAAGAAGCAGATCTCCATTGTTGAGTTGAGAGGTTGGGAACAATTCATAGAAGACGGTTCAACTATCTGGACTCTGTAATGTCGATCAAAGCGGCGGCTTCGCCACAACATCAACTGCTTCCTTCCCCGAGCACTTGCTCGAATGTATCGGTCCCAATCTTGCTCAAGTCCTCGTCTATGTTTCACGGCAAACGCAGAGGTTTCAGGTTCAATTCTCTGCGATGTCAATCTTTGCAATCCACGGCTGTTTCGAAGGACCTCTCGACGCAGGCGGGGAACGGATTCCTAGAGCCGAATGCTGTGGAGCGCAATGTGGTTCGTCTGGGGTTGCCGAGCAAGGGTCGAATGGCCGCCGATACACTTGATCTACTCAAGGATTGTCAGCTTGCAGTGCGGCAGGTTAATCCTAGGCAGTATGTTGCAGATATACCAGGACTATCCAAACTAGAAGTCTGGTTTCAACGACCAAAAGATGTCGTTCGTAAGCTTCTCACGGGGGATTTAGACCTCGGGATTGTCGGTATTGATACTGTTGCTGAATTTGGACAGGACGATGAGGACTTGATCTTCGTTCATGATGCCCTTGAGTATGGGGAGTGTCGGTTGTCTATTGCAATTCCAAAGTATGGAATTTTTGAGAACATTTCATCTATGGATGAACTGGCAGCAATGCCTCAATGGACTGAGAACAGGCCTCTACGAATTGCAACAGGATTTACTTACCTAGGTCCAAAATTTGTGAAGGAGAAGGGGCTAAAGAATGTCAAGTTTTCGACAGCTGATGGAGCATTGGAAGCAGCTCCTGCTATGGGTATAGCCGATGCCATTTTGGACCTTGTGAGCAGTGGAACAACTTTGCGTGAAAACAATCTCAAGGAAATAAAGGATGGAACTGTTCTAGAGAGTCAGGCTGTATTTGTTGCAAGTAAGAGAGCACTTCAGCGCAAGGATGTGCTAGAGGCCGCACATGAAATGCTCGAAAGGTTGGAAGCCCATTTAAGAGCAGTTGGTCAGTTTACGGTCACTGCAAACATGCGAGGAAGTTCAGCAGAGGAAGTGGCAGAACGTGTAATCAAGCAAACTGATTTTCGTGGTTTACAGGGGCCCACTGTGAGTCCTGTCTTTTCCAAGAGAAATGGAGAAGTTAAGCCAGATTATTATGCCATAGTCATATGTGTACCCAAAAAACAACTTTATGATTCTGTCCGCCAGTTGAGAGCAATTGGAGGAAGTGGAGTTCTTGTTTCTCCATTAACATATATTTTTGATGAAGAACCACCAAGATGGCGCAAACTTTTGGACAAGTTAAATCTTTGACTGCATTCCTATGCTTGCTTCGTTTGCTCACCACTTGTTGTAACAATTCCCTTGTGCAGGAAAAATCTTAGCCACTGCTTATTGCTCGGCAGTTTTCCCTCTAGTCTAGTTGAGTTACATTATTACAATTTCAAGTTGGATGAGAAAGAAGGTAACAATGAAGATCTATATCAACCATTTGTATTGAATACACCAGGTTTAAGCAGCATTCCCCCATCTTGCTGTCAGGACAGCCAAAGACACTAACGTTTTAAACAGAACAGGTTATATTTATACTTCTGTATATCAAATTTTGTTCATCTAATTCTGTCCCGCTCTTATTACTCAAAAGCGTCTTCAGGAATGTTTTAGTCAGTCTGCCAATATCTGTATTGTCTATAGTTTCTTACCCCGGCACCCATAATTGTTGGTAGCAATCTGTTTTCGTCTATTTTCTGTTTGTTTCATGACTAACTGGATATGATAAACTTTCAATGAGCTGGGATGACAATTTTGTATTTTGTTGGCATTATTGGAAATTATTTTATTGCACGAGGCCAGCAGAGTAAATCCCACTAAATCTATATTATGTTTTATTGGCAGAGCTTGAATGACATTATAGAATGTTACT

Ace file of the UniGene sp_v3.0_unigene17826

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	chloroplast ATP phosphoribosyl transferase [Alyssum montanum]	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	ATP phosphoribosyltransferase HisG	IPR001348	-	-
Sma3	ATP phosphoribosyltransferase, catalytic domain	IPR013820	-	-
Sma3	ATP phosphoribosyltransferase, conserved site	IPR018198	-	-
Sma3	Histidine biosynthesis HisG, C-terminal	IPR013115	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G58080.1	ATATP-PRT1, HISN1A, ATP-PRT1 ATP phosphoribosyl transferase 1 chr1:21504562-21507429 REVERSE LENGTH=411	67%
RefSeq	Arabidopsis thaliana	NP_176105.1	ATP phosphoribosyl transferase 1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002325923.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY9

Fln msg:

Fln protein: MSIKAAASPQHQLLPSPSTCSNVSVPILLKSSSMFHGKRRGFRFNSLRCQSLQSTAVSKDLSTQAGNGFLEPNAVERNVVRLGLPSKGRMAADTLDLLKDCQLAVRQVNPRQYVADIPGLSKLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVAEFGQDDEDLIFVHDALEYGECRLSIAIPKYGIFENISSMDELAAMPQWTENRPLRIATGFTYLGPKFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRALQRKDVLEAAHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICVPKKQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDKLNL*

Protein Length: 414

Fln nts: TGAAGACACTTTGAATCTCAATGCTCAAGAAAAGGTATCAACACAGACCAAAAACGGAACACTTTGAATCCTTACCACGTAACAGTAAAGGCGACCAGAGGCTCATGTAGGGCATGTCACGTGGGTGAAGATCAAGAAGCAGATCTCCATTGTTGAGTTGAGAGGTTGGGAACAATTCATAGAAGACGGTTCAACTATCTGGACTCTGTA_-_ATGTCGATCAAAGCGGCGGCTTCGCCACAACATCAACTGCTTCCTTCCCCGAGCACTTGCTCGAATGTATCGGTCCCAATCTTGCTCAAGTCCTCGTCTATGTTTCACGGCAAACGCAGAGGTTTCAGGTTCAATTCTCTGCGATGTCAATCTTTGCAATCCACGGCTGTTTCGAAGGACCTCTCGACGCAGGCGGGGAACGGATTCCTAGAGCCGAATGCTGTGGAGCGCAATGTGGTTCGTCTGGGGTTGCCGAGCAAGGGTCGAATGGCCGCCGATACACTTGATCTACTCAAGGATTGTCAGCTTGCAGTGCGGCAGGTTAATCCTAGGCAGTATGTTGCAGATATACCAGGACTATCCAAACTAGAAGTCTGGTTTCAACGACCAAAAGATGTCGTTCGTAAGCTTCTCACGGGGGATTTAGACCTCGGGATTGTCGGTATTGATACTGTTGCTGAATTTGGACAGGACGATGAGGACTTGATCTTCGTTCATGATGCCCTTGAGTATGGGGAGTGTCGGTTGTCTATTGCAATTCCAAAGTATGGAATTTTTGAGAACATTTCATCTATGGATGAACTGGCAGCAATGCCTCAATGGACTGAGAACAGGCCTCTACGAATTGCAACAGGATTTACTTACCTAGGTCCAAAATTTGTGAAGGAGAAGGGGCTAAAGAATGTCAAGTTTTCGACAGCTGATGGAGCATTGGAAGCAGCTCCTGCTATGGGTATAGCCGATGCCATTTTGGACCTTGTGAGCAGTGGAACAACTTTGCGTGAAAACAATCTCAAGGAAATAAAGGATGGAACTGTTCTAGAGAGTCAGGCTGTATTTGTTGCAAGTAAGAGAGCACTTCAGCGCAAGGATGTGCTAGAGGCCGCACATGAAATGCTCGAAAGGTTGGAAGCCCATTTAAGAGCAGTTGGTCAGTTTACGGTCACTGCAAACATGCGAGGAAGTTCAGCAGAGGAAGTGGCAGAACGTGTAATCAAGCAAACTGATTTTCGTGGTTTACAGGGGCCCACTGTGAGTCCTGTCTTTTCCAAGAGAAATGGAGAAGTTAAGCCAGATTATTATGCCATAGTCATATGTGTACCCAAAAAACAACTTTATGATTCTGTCCGCCAGTTGAGAGCAATTGGAGGAAGTGGAGTTCTTGTTTCTCCATTAACATATATTTTTGATGAAGAACCACCAAGATGGCGCAAACTTTTGGACAAGTTAAATCTTTGA___CTGCATTCCTATGCTTGCTTCGTTTGCTCACCACTTGTTGTAACAATTCCCTTGTGCAGGAAAAATCTTAGCCACTGCTTATTGCTCGGCAGTTTTCCCTCTAGTCTAGTTGAGTTACATTATTACAATTTCAAGTTGGATGAGAAAGAAGGTAACAATGAAGATCTATATCAACCATTTGTATTGAATACACCAGGTTTAAGCAGCATTCCCCCATCTTGCTGTCAGGACAGCCAAAGACACTAACGTTTTAAACAGAACAGGTTATATTTATACTTCTGTATATCAAATTTTGTTCATCTAATTCTGTCCCGCTCTTATTACTCAAAAGCGTCTTCAGGAATGTTTTAGTCAGTCTGCCAATATCTGTATTGTCTATAGTTTCTTACCCCGGCACCCATAATTGTTGGTAGCAATCTGTTTTCGTCTATTTTCTGTTTGTTTCATGACTAACTGGATATGATAAACTTTCAATGAGCTGGGATGACAATTTTGTATTTTGTTGGCATTATTGGAAATTATTTTATTGCACGAGGCCAGCAGAGTAAATCCCACTAAATCTATATTATGTTTTATTGGCAGAGCTTGAATGACATTATAGAATGTTACT

Fln Alignment:

Contig17826___MSIKAAASPQHQLLPSPSTCSNVSVPILLKSSSMFHGKRRGFRFNSLRCQSLQ-STAVSKDLSTQAGNGFLEPNAVERNVVRLGLPSKGRMAADTLDLLKDCQLAVRQVNPRQYVADIPGLSKLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVAEFGQDDEDLIFVHDALEYGECRLSIAIPKYGIFENISSMDELAAMPQWTENRPLRIATGFTYLGPKFVKEKGLKNVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKDGTVLESQAVFVASKRA-LQRKDVLEAAHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAERVIKQTDFRGLQGPTVSPVFSKRNGEVKPDYYAIVICVPKKQLYDSVRQLRAIGGSGVLVSPLTYIFDEEPPRWRKLLDKLNL
B8LKY9_______________MSIKAAAS-QQQLLPSLSTYSNVSVPILLKSSSVFYDKRRGLRFDSLRCQSSSASTAVSKDLSTQVGNGFPESNAVERNVVRLGLPSKGRMATDTLDLLKDCQLAVRQVNPRQYVADIPGLSNLEVWFQRPKDVVRKLLTGDLDLGIVGIDTVSEFGQGNEDLIFVHDALEYGECRLSIAIPKYGIFQNISSMDELATMPEWTENRPLRITTGFTYLGPKFVKEKGLKHVKFSTADGALEAAPAMGIADAILDLVSSGTTLRENNLKEIKGGTVLESQAVFVASKRALLQRKGVLEATHEMLERLEAHLRAVGQFTVTANMRGSSAEEVAECVLEQTNFRGLQGPTVSPVFSKKNGEVKPDYYAIVICVPKKQLYDSVCQLRKIGGSGVLVSPLTYIFDEEPPRWRKLLDQLNL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1464		6		93	0.999153
1470		34		65	1.0
1722	84			15	1.0
1781		75		25	1.0
1804	18		81		0.999994
1899		60		40	1.0
1909	40	60			1.0
1981		33		66	0.997452
1984			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain