SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17801

Length: 1539 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17801

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ras-related protein RABH1e n=4 Tax=Brassicaceae RepID=RAH1E_ARATH	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	GTP binding	GO:0005525	Molecular Function	-
Sma3	protein transport	GO:0015031	Biological Process	-
Sma3	small GTPase mediated signal transduction	GO:0007264	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Small GTPase superfamily, Rab type	IPR003579	-	-
Sma3		IPR015600	-	-
Sma3		IPR013753	-	-
Sma3	Small GTPase superfamily	IPR001806	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G10260.1	AtRABH1e, RABH1e RAB GTPase homolog H1E chr5:3219991-3221301 FORWARD LENGTH=207	90%
RefSeq	Arabidopsis thaliana	NP_196588.3	RAB GTPase H1E [Arabidopsis thaliana]	90%
RefSeq	Populus trichocarpa	XP_002307084.1	predicted protein [Populus trichocarpa]	94%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV9

Fln msg:

Fln protein: MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQKAGGCSC*

Protein Length: 209

Fln nts: ATGACGACTGTTACCGACAGTAACAAATCCTCAATTTTTGACGCCAACTGACTCGATCTACCCGAAACATCTTCCACACCAAGGTCATCATTTTCTCTTGTTTTCTCGGCCCGCGATCTGTTAGTGGGCACATTCGTTTCCGATCTCCCGCCCCTCTTCCAGATCTGGGTCGTTGCAATTGTGGGAAAACACTATTTTCAGGTGCAGAATCTGCTCCCCCTCCCCCTGAAGACCATCGATTGCAGAAATTCCTAACTCTTCAAAACGCAGTTGGAGAATCCCGGAATAGGGTTTGAGATTGGATATCAGA_-_ATGGCTACCGTGTCGCCACTTGCCAAATACAAATTGGTTTTCCTGGGAGATCAGTCTGTGGGGAAGACTAGCATTATCACTCGCTTCATGTACGACAAGTTCGACAATACTTACCAGGCTACTATTGGTATTGATTTTCTATCGAAGACGATGTACCTTGAGGATCGGACAGTTCGATTGCAGTTGTGGGATACTGCTGGTCAAGAACGGTTTCGAAGTCTGATTCCTAGTTATATTCGCGACTCATCTGTTGCCGTAATTGTTTTCGATGTTGCAAACAGACAATCCTTTTTAAACACTGCACGGTGGATTGAAGAAGTACGTACTGAACGTGGTAGTGATGTGATTATTGTCCTTGTTGGCAACAAAACAGACCTTGTAGACAAGAGGCAAGTTTCTATTGAGGAAGGTGACGCCAAAGCACGGGAGTTTGGGGTCATGTTTATTGAAACCAGTGCAAAAGCAGGTTTTAACATCAAGGCATTGTTCCGGAAGATAGCTGCTGCATTGCCAGGAATGGAGACTCTCTCATCAACAAAGCAGGAGGACATGGTTGATGTTAATTTGAAACCTACAGTTAATTCTTCTCAAGCAGAGCAAAAAGCGGGAGGATGCTCTTGCTAA___AGTGTAAAGTATGGCACAATCCGCAACCTTCCTAGTGGCTGTATTCTTTGTAGTTCTTTGGGATGTTGAGTTTTTGGGAAAATATGAATGCATCGACATTGTTGGTTTAGCTGTAGATCAAGATGATCTTGAGTTAATTCAATAAACAGGATTCATATTGACGTTAATGTTTGTAGGCCTCATCTATTCGAAGATTTGTAATTACATAATTTTTAGTTTAGTAGTCACGTGTTTGAGGTTCTAGGGATTTTTTTGATTTTTGAATTTACCATATAGATTGCTGCACCTTTTGATTTCCACTCGAGATGCTGTTGAGAGATAGGACATTGATTTCTAATGTACATGAATCTCTGGTATAATATAACAAATTCCTTGATGATGGATTAATCGTTACTCCACATCACTCTCTCTCAAGGACAGGAAATAAATTGTGCTTCTTAGTCTGTTGTTGTACTAGTAACATTCACAGCTGCATGTTGCACTGTTATTTACCAACAAAGGAAATGTTAAGAATGTAAGAGAGGCAAAGTGAACTGTAGTGTTGTTTAGAGGATGCTGTCATTCATATACAAATAATTGATATTAAAATAAATTTTGTTGGGACA

Fln Alignment:

Contig17801___MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQKAGGCSC
A9NSV9_______________MATVSPLAKYKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVFDVANRQSFLNTARWIEEVRTERGSDVIIVLVGNKTDLVDKRQVSIEEGDAKAREFGVMFIETSAKAGFNIKALFRKIAAALPGMETLSSTKQEDMVDVNLKPTVNSSQAEQKAGGCSC

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
1127	11		88		0.923564
1200	88			11	0.923564
1338	11			88	0.999937
1381		40		60	1.0
1402		66		33	1.0
1416		25	75		1.0
1477		20	80		0.995493

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain