SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17798

Length: 1393 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17798

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chlorophyll a-b binding protein type I, chloroplastic n=12 Tax=Pinaceae RepID=CB21_PINTH	-	-	90%
FL-Next	tr=Chlorophyll a/b-binding protein; Pinus thunbergii (Japanese black pine) (Pinus thunbergiana).	-	-	97%
Sma3	Chlorophyll a/b-binding protein	-	-	-

Source	Gene names
Sma3	cab;

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	photosynthesis, light harvesting	GO:0009765	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Chlorophyll A-B binding protein, plant	IPR001344	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G27690.1	LHCB2.4, LHCB2.3, LHCB2 photosystem II light harvesting complex gene 2.3 chr3:10256002-10256921 FORWARD LENGTH=266	86%
RefSeq	Arabidopsis thaliana	NP_189406.1	photosystem II light harvesting complex protein 2.3 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002321186.1	light-harvesting complex II protein Lhcb2 [Populus trichocarpa]	89%

Full-Lengther Next Prediction

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
377	33			66	0.997452
381	33		66		1.0
385		33	66		1.0
389		50		50	1.0
391	50	50			1.0
396		50		50	1.0
397	50	50			1.0
399	50			50	1.0
401		66	33		0.997452
402		66	33		0.997452
403			33	66	0.997452
405	66			33	0.997452
411		33	66		0.997452
412		33	66		0.997452
415		33		66	0.997452
416		33	66		0.997452
422		33		66	0.997452
424			33	66	0.997452
426	33	66			0.997452
427			33	66	0.997452
429	66	33			0.997452
749		14		85	0.993533
790	12	87			0.992554
791			87	12	0.992554
793	87		12		0.992554
841	85		14		0.993533
859		14		85	0.993533
1034	90			10	0.90298
1094		90		10	0.90298
1106		40	60		1.0
1148		11		88	0.923564
1252			3	96	1.0
1287		80	19		1.0
1307			21	78	1.0
1352			30	70	1.0
1356	11			88	0.923564
1357			88	11	0.923564
1365	12	87			0.992554
1366		50		50	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain