SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17793

Length: 1390 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17793 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1 linker n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RTA3_PHYPA	-	-	9.0e-23	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Sma3	Histone H1	-	-	0.0	-

Source	Gene names
Sma3	GSVIVT00002167001; GSVIVT00020134001; GSVIVT00023870001; H15; H1c; H1e; H1f; HON1501; HON1503; HON1504; HON901; HON902; HON904; HON905; HON906; His1; KCDL917; LOC_Os03g58470; MICPUN_113606; OSJNBa0052F07.24; Os03g0799000; OsI_13914; OsJ_12968; PHYPADRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleosome	GO:0000786	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	nucleosome assembly	GO:0006334	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTL2

Fln msg:

Fln protein: MASAETTAKPVVNNVDKEKKPRSSKGSKPSPSHPTYLQMITEAITSLNESTGSSQYAIAAYIGNKYKSQLPANFKKLLTVQLRNLARSGKLTKVKNSFKLSEELKKPVKPKAVKPKALVNKPAAKSKAAPGLKKVSRPAKAPAKVTEVLKVSTPKPAKAPAKVTEVLKVSTPKPATSTEKLEKAAAPVKKGATVKKEAPAKKLAVAKKPAKAVKRGAPPKPEKAVPATKKAKK*

Protein Length: 235

Fln nts: GCAACGAGGCAACGACCCAGAACGAATCTCGCTTTGAATACTCAATCTGCAAAGAATGGCCTAAAAATGAGCCAGTGACCTCCCTGGCCGACCCGGGACGGTGAGCATTTCTAGGTGCTCTTGTCTTCCCCTGTCTATATAAGCAGCAATAACAATCCATTTTCTACTATCTAGACGTTATTTTTTCGAGATCTCGTTTCCTGTATCATTATCTTTTGTAGTTTTTGAGCATTTTGGCGATTTAAGCAA_-_ATGGCTTCAGCTGAGACAACTGCAAAGCCTGTAGTTAACAATGTTGATAAAGAAAAGAAGCCGAGGTCTTCCAAGGGATCGAAACCCTCACCTTCTCATCCTACATATCTTCAGATGATCACGGAAGCGATTACCTCTTTGAATGAGAGTACCGGTTCTAGCCAGTATGCTATAGCAGCCTATATCGGCAACAAGTACAAGTCCCAACTCCCTGCCAATTTCAAGAAGCTGCTAACAGTTCAGCTGAGAAATCTTGCCAGATCTGGCAAGCTCACCAAGGTCAAGAACTCTTTCAAGCTTTCAGAGGAGTTGAAAAAGCCGGTAAAGCCGAAGGCTGTGAAGCCAAAAGCCCTGGTCAATAAGCCTGCAGCTAAGTCCAAGGCGGCGCCCGGGCTCAAGAAGGTCTCGAGGCCTGCTAAAGCCCCTGCCAAAGTAACCGAGGTTCTTAAGGTCTCTACGCCGAAGCCTGCTAAAGCCCCTGCCAAAGTAACCGAGGTTCTTAAGGTCTCTACGCCGAAGCCTGCAACGTCCACTGAAAAATTAGAGAAGGCAGCGGCACCTGTTAAGAAGGGGGCAACTGTAAAGAAAGAAGCTCCCGCCAAGAAGCTTGCTGTTGCCAAGAAACCTGCCAAGGCTGTAAAGAGGGGGGCTCCTCCTAAGCCCGAGAAAGCGGTGCCTGCTACAAAGAAGGCCAAGAAATGA___GATCGAGATTTCTAAATGTAAATTAATGTGATATTTGACCTCTTGTATGGCCTGCTGTTGCCATAGATGTCATTCGCCATAGATGTCCAACAGGGGGAATGACATCTATGGCAACAGCATGGAGAATCAGTGGTCATGTAAATTCAGGGTTTAACTTCTTCTCTGGATTATAATTCTTTCTGGTCTTAATTAAAATTAAGATAAGAAGCGCAAAGGGTTGATGTATTTAGTTGACTTGAATTATCGCTCAAGTGAAGACCGATGTGATGATTTATCTACGCTTTATCACCTGTTATATAAAGAATTATAATTTCTGTATTAATTCCGCAATAATCATCGGGCAAAGGGATGTTTGTTGAGAAAAACTATTGTATACTTTTTCACATTCATTGGAAAATTAGGTCATGTGAAACATTTAAAATGATTGTAGATTGTTGTT

Fln Alignment:

Contig17793___MASAETTAKPVVNNVDXXXXXXXXXXXXXXXXXPTYLQMITEAITSLNESTGSSQYAIAAYIGNKYKSQLPANFKKLLTVQLRNLARSGKLTKVKNSFKLSEELXXXXXXXXXXXXXXXXXXXXKS---KAAPGLKKVSRPAKAPAKVTEVLKVSTPKPAKAPAKV-------------TEVLKVSTPKPATSTEKLEKAAAPVKKGA
C0PTL2_______________MASAETTAEPVANNVVKEKKPRASKGPKPPPSHPTYLQMITEAITSLKERTGSSQYAISAYISSKYQSHLPANFKKILTVQLRNLAKSGKLTKVKNSFKLSEELKKPVKPKAAKPSKPKAPAKKPAPKPKAATGPKKVSKPAKAPAKVAKAPKVPKPKPVAAPKKVEKPAAPAKKAAPAKKAAPAKKPVPAKKPAPSKKPAKPVKKAA

SNPs (tot: 4)

Position	A %	C %	G %	Probability
415	88		11	0.923564
574		76	5	1.0
815	12		87	0.992554
1210	90		10	0.90298

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain