SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17765

Length: 2388 nt

UniGene Fasta

>sp_v3.0_unigene17765
ATCAATTGTACAATAGCCACCGAGCTTCTCGCGGGAATTAGGAATTTGCTATTAAACCAATTAGGGATTAGGAATTTGCTATTAAACCAATCACCAACCACACGGGGGTTGCATAAGAAACAAACAAAGATACACGGAAGCACACCCGAATCTAACCACTTGGGTTGTCTTGGAGTAGCCTTCAGGGCTGTGGGTCCGGCCTTGTTCTATCAATGCATGTGAGGATAACTTGTCTGTCGGTTCACGACTGTAATTTCCAATCAGCCAGTTGAAGGCTGTGTTAATCCGGAGACTGCTGTTCGCGCCGTGCCGTGAGTAATTCCGAGGCTGCCGAGTTGTTGATTTCTGATTTTATATTTCAGACTTGGTTATTCATTTTGGTGAGGAGTCGATTGGATTTGTAGATATCATGAATAAGGTTCTTTAACAGAGGCCTCAAGGCCCCAGGCCTGACGAAGAGTTGTGTGGTGTATTGAGCAAGATTGATCTCAAGTGGGGAATCAGAGTTATGAGCATGCAGAGTGTGAAAGCCCGAGTTGGCAAATATGAGGTGGGGCGTACTCTCGGGGAGGGCACTTTTGCTAAGGTCAAGTTTGGCAGGAATTCAGAGACCGGTGAGAGTGTGGCCATCAAGGTGCTGGATAAAGAGAAGGTGCTCAAGCACAAGATGATAGAACAGATAAAACGGGAAATATCAACCATGAAGTTGATTAAGCATCCAAATGTAGTCCAGCTGTATGAGGTCATGGCCAGTAAGACAAAAATTTACATTGTACTTGAGTTTATATCTGGAGGCGAGCTCTTTGACAAAATAGTTAACCATGGAAGGTTGAAGGAAGATGAAGCAAGGAGATACTTCCAGCAGCTTATTAATGCTGTTGATTACTGCCATAGTAGGGGTGTCTACCATAGGGACTTGAAGCCAGAAAATTTGCTTCTGGATACATATGGAAATCTTAAAGTATCAGATTTTGGCCTAAGTGCACTGTCTCAACAAGTCAGGGATGACGGTTTGCTTCACACTACTTGTGGAACACCCAATTATGTTGCTCCTGAGGTCATCAATGATAAAGGTTACGACGGGGCAACTGCAGACTTGTGGTCATGTGGTGTCATCCTATTTGTTTTAATGGCAGGTTACTTGCCTTTTGATGATCCAAACCTTATGACATTGTATAAAAAGATATATAAAGCGGATTTTACGTGCCCTTCATGGTTTTCTTCTAGTGCAAAGAAATTAATTACAAGGATTTTGGACCCAAACCCTAAGACACGAATTACAATACCTGAGATTTTAGACAATGAATGGTTCAAGAAAGGTTATAAGCCACCCAAGTTTAATGAAGAAGAAGATGTAAATCTGGATGATGTTGATGCTGTTTTCAATGATTCAGAAGAACATCTTGTTACAGAAAAAAAGGAAACAAAACCAGAGGTGATGAATGCATTTGAACTTATCTCCATGTCCCAGGGTCTCAATCTTGGCAATCTCTTTGAAATGGACATGGGTATGGTTAAGCGAGAAACGAGGTTTGCATCTAAACGCCCTGCAAACGAGATAGTATCAAAAATTGAGGAAGCTGCAAAGCCTCTTGGATTCAATGTGCAAAAGAGAAATTACAAGATGAAGATGCAAGGTTCAAAGACTGGAAGAAAGGGTCATTTGAATGTAGCTACAGAGGTATTTGAAGTAGCTCCTTCTCTTTTTATGGTTGAAGTCCGCAAGGCTGGAGGTGATACCTTGGAATTTCACAAGTTTTACAAGAACCTTTCGGCAGGGCTAAAAGATGTTGTTTGGAAAGCAGAAGACACTGGGGAAGAGAAGAACAAAGTGTAAGTAGAATACTGGGGAAAGTACCATATTAGATACAACTACAATAATTTGTTTATCCACCTCTTGGTATTTTCTGTGCTTTGGCAGTTTGTATATATACATATTACAAACAGATGTTTATTTTCTCAAAAGTACTCGTCCTTGCTAGGTTTGGGTTGTAATGAAGTAGACTTGAAGATGACTAATGTTCTCCTCGATCTCTATATTGATGTAATCATTGCTTGATTTTGAAGCGTTGTGTCATTTACTATTTTTGGCTTGGTAAAAACTTATTACTGAGCTGCTGTAAATTTGACAATTTAAGAATGTATTACCTTTCAGAGTTCGATTATTGAGTTTTTGGGCTCACTACAGGGCTATATATTCAACAAATTAAGAATGTATTACCTTTCGGAACTCGATTATTGAGTTTTTGGGTTCACTACAGAGATATATAGTGAACATTACGTGTTACCTTTCAGAACTATTATTGAGCTTTTGGGCTCACTTTATGTACTTTGGTTCTTGCGAAGATTAATTTATTCTTTGTCAAGGGTAATAGTTTTCAGTTTGGG

Ace file of the UniGene sp_v3.0_unigene17765

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	CBL-interacting protein kinase 3 n=8 Tax=rosids RepID=A0MNJ1_POPTR	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	NAF domain	IPR004041	-	-
Sma3	NAF/FISL domain	IPR018451	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3		IPR017442	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G26980.4	CIPK3 CBL-interacting protein kinase 3 chr2:11515234-11518426 REVERSE LENGTH=451	74%
RefSeq	Arabidopsis thaliana	NP_850094.1	CBL-interacting serine/threonine-protein kinase 3 [Arabidopsis thaliana]	74%
RefSeq	Populus trichocarpa	XP_002330980.1	predicted protein [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ83

Fln msg: your sequence is longer than subject: 443 - 387

Fln protein: MSMQSVKARVGKYEVGRTLGEGTFAKVKFGRNSETGESVAIKVLDKEKVLKHKMIEQIKREISTMKLIKHPNVVQLYEVMASKTKIYIVLEFISGGELFDKIVNHGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVINDKGYDGATADLWSCGVILFVLMAGYLPFDDPNLMTLYKKIYKADFTCPSWFSSSAKKLITRILDPNPKTRITIPEILDNEWFKKGYKPPKFNEEEDVNLDDVDAVFNDSEEHLVTEKKETKPEVMNAFELISMSQGLNLGNLFEMDMGMVKRETRFASKRPANEIVSKIEEAAKPLGFNVQKRNYKMKMQGSKTGRKGHLNVATEVFEVAPSLFMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDTGEEKNKV*

Protein Length: 444

Fln nts: ATCAATTGTACAATAGCCACCGAGCTTCTCGCGGGAATTAGGAATTTGCTATTAAACCAATTAGGGATTAGGAATTTGCTATTAAACCAATCACCAACCACACGGGGGTTGCATAAGAAACAAACAAAGATACACGGAAGCACACCCGAATCTAACCACTTGGGTTGTCTTGGAGTAGCCTTCAGGGCTGTGGGTCCGGCCTTGTTCTATCAATGCATGTGAGGATAACTTGTCTGTCGGTTCACGACTGTAATTTCCAATCAGCCAGTTGAAGGCTGTGTTAATCCGGAGACTGCTGTTCGCGCCGTGCCGTGAGTAATTCCGAGGCTGCCGAGTTGTTGATTTCTGATTTTATATTTCAGACTTGGTTATTCATTTTGGTGAGGAGTCGATTGGATTTGTAGATATCATGAATAAGGTTCTTTAACAGAGGCCTCAAGGCCCCAGGCCTGACGAAGAGTTGTGTGGTGTATTGAGCAAGATTGATCTCAAGTGGGGAATCAGAGTT_-_ATGAGCATGCAGAGTGTGAAAGCCCGAGTTGGCAAATATGAGGTGGGGCGTACTCTCGGGGAGGGCACTTTTGCTAAGGTCAAGTTTGGCAGGAATTCAGAGACCGGTGAGAGTGTGGCCATCAAGGTGCTGGATAAAGAGAAGGTGCTCAAGCACAAGATGATAGAACAGATAAAACGGGAAATATCAACCATGAAGTTGATTAAGCATCCAAATGTAGTCCAGCTGTATGAGGTCATGGCCAGTAAGACAAAAATTTACATTGTACTTGAGTTTATATCTGGAGGCGAGCTCTTTGACAAAATAGTTAACCATGGAAGGTTGAAGGAAGATGAAGCAAGGAGATACTTCCAGCAGCTTATTAATGCTGTTGATTACTGCCATAGTAGGGGTGTCTACCATAGGGACTTGAAGCCAGAAAATTTGCTTCTGGATACATATGGAAATCTTAAAGTATCAGATTTTGGCCTAAGTGCACTGTCTCAACAAGTCAGGGATGACGGTTTGCTTCACACTACTTGTGGAACACCCAATTATGTTGCTCCTGAGGTCATCAATGATAAAGGTTACGACGGGGCAACTGCAGACTTGTGGTCATGTGGTGTCATCCTATTTGTTTTAATGGCAGGTTACTTGCCTTTTGATGATCCAAACCTTATGACATTGTATAAAAAGATATATAAAGCGGATTTTACGTGCCCTTCATGGTTTTCTTCTAGTGCAAAGAAATTAATTACAAGGATTTTGGACCCAAACCCTAAGACACGAATTACAATACCTGAGATTTTAGACAATGAATGGTTCAAGAAAGGTTATAAGCCACCCAAGTTTAATGAAGAAGAAGATGTAAATCTGGATGATGTTGATGCTGTTTTCAATGATTCAGAAGAACATCTTGTTACAGAAAAAAAGGAAACAAAACCAGAGGTGATGAATGCATTTGAACTTATCTCCATGTCCCAGGGTCTCAATCTTGGCAATCTCTTTGAAATGGACATGGGTATGGTTAAGCGAGAAACGAGGTTTGCATCTAAACGCCCTGCAAACGAGATAGTATCAAAAATTGAGGAAGCTGCAAAGCCTCTTGGATTCAATGTGCAAAAGAGAAATTACAAGATGAAGATGCAAGGTTCAAAGACTGGAAGAAAGGGTCATTTGAATGTAGCTACAGAGGTATTTGAAGTAGCTCCTTCTCTTTTTATGGTTGAAGTCCGCAAGGCTGGAGGTGATACCTTGGAATTTCACAAGTTTTACAAGAACCTTTCGGCAGGGCTAAAAGATGTTGTTTGGAAAGCAGAAGACACTGGGGAAGAGAAGAACAAAGTGTAA___GTAGAATACTGGGGAAAGTACCATATTAGATACAACTACAATAATTTGTTTATCCACCTCTTGGTATTTTCTGTGCTTTGGCAGTTTGTATATATACATATTACAAACAGATGTTTATTTTCTCAAAAGTACTCGTCCTTGCTAGGTTTGGGTTGTAATGAAGTAGACTTGAAGATGACTAATGTTCTCCTCGATCTCTATATTGATGTAATCATTGCTTGATTTTGAAGCGTTGTGTCATTTACTATTTTTGGCTTGGTAAAAACTTATTACTGAGCTGCTGTAAATTTGACAATTTAAGAATGTATTACCTTTCAGAGTTCGATTATTGAGTTTTTGGGCTCACTACAGGGCTATATATTCAACAAATTAAGAATGTATTACCTTTCGGAACTCGATTATTGAGTTTTTGGGTTCACTACAGAGATATATAGTGAACATTACGTGTTACCTTTCAGAACTATTATTGAGCTTTTGGGCTCACTTTATGTACTTTGGTTCTTGCGAAGATTAATTTATTCTTTGTCAAGGGTAATAGTTTTCAGTTTGGG

Fln Alignment:

Contig17765___MIEQIKREISTMKLIKHPNVVQLYEVMASKTKIYIVLEFISGGELFDKIVNHGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVINDKGYDGATADLWSCGVILFVLMAGYLPFDDPNLMTLYKKIYKADFTCPSWFSSSAKKLITRILDPNPKTRITIPEILDNEWFKKGYKPPKFXXXXXXXXXXXXAVFNDSEEHLVTEKKETKPEVMNAFELISMSQGLNLGNLFEMDMGMVKRETRFASKRPANEIVSKIEEAAKPLGFNVQKRNYKMKMQGSKTGRKGHLNVATEVFEVAPSLFMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDTGEEKN
B8LQ83_______________MIEQIKREICTMKLIKHPNVVQLYEVMASKTKIYIVLEFVSGGELFDKIVNHGRLKEDEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVINDKGYDGATADLWSCGVILFVLMAGYLPFDDSNLMTLYKKIYKADFTCPSWFSSSAKKLITRILDPNPKTRITIPEILDNEWFKKGYKPPKFNEEEDVNLDDIDAVFNDSEEHLVTEKKETEPELMNAFELISMSQGLNLGNLFEMDMGMVKRETRFASKRPANEIVSKIEEAAKPLGFNVQKRNYKMKMQGSKTGRKGHLNVATEVFEVAPSLYMVEVRKAGGDTLEFHKFYKNLSAGLKDVVWKAEDIGEEKN

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1240			33	66	0.997452
1347			66	33	0.997452
1348	66			33	0.997452
2350		37		62	1.0
2373	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain