SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17763

Length: 636 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17763

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gibberellin regulated protein n=1 Tax=Medicago truncatula RepID=Q2HRJ5_MEDTR	-	-	3.0e-15	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Similarity to gibberellin-stimulated transcript 1 like protein	-	-	7.797e-06	-

Source	Gene names
Sma3	At5g59845; At5g59845/MMN10.7; GIR1; RCOM_1588210;

Source	InterPros	Term	Type	e value	Identity
Sma3	Gibberellin regulated protein	IPR003854	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G39540.1	Gibberellin-regulated family protein chr2:16500866-16501241 FORWARD LENGTH=87	7.0e-21	56%
RefSeq	Arabidopsis thaliana	NP_181486.1	gibberellin-regulated protein [Arabidopsis thaliana]	9.0e-21	56%
RefSeq	Populus trichocarpa	XP_002327192.1	predicted protein [Populus trichocarpa]	6.0e-20	49%

Full-Lengther Next Prediction

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
140			83	16	0.994512
143			16	83	0.994512
154			27	72	1.0
186			27	72	1.0
190		27	72		1.0
221		11		88	0.923564
227	88		11		0.923564
237	87			12	0.992554
238	87			12	0.992554
252	20		80		0.995493
268	80			20	0.995493
269		80		20	0.995493
287	60			40	1.0
393	20		80		0.995493
401		80		20	0.995493
450		80		20	0.995493
540	10		90		0.90298
570		90		10	0.90298
579		90		10	0.90298
594		10		90	0.90298

SSRs (tot: 1)

Start position	End position	Sequence	Length
391	404	CTA CTA CTA CTA CT	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain