SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17745

Length: 3930 nt

UniGene Fasta

>sp_v3.0_unigene17745
TTCGGCACGAGGGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCGCTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGCTGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGACGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGGTATGGACAATGAAGGAAACCAGCGCGCATGAACTGCCGATAGCAAGTGTATCATTGCAATCAAACCAATTTTTCAGTCTCGTGATATAAAATGATTATTTGGATTTTGTCTAGTTGTTCTAGCATAATGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTCTCCCACTTTTAAATATGTAGTTTTTTGGGTTTTTCAAAACGTGATAAGTTTTTGATCTAATGCATTCGTCTAAAATCAAACTGATTTTTCTTGGAAGACTTTATTTCCTCTGTTTTCTCCTACATATTTTGAAGTTTAGTTTATAGTCTGCAAAGAGATCCTCAAGCAGGATAAGATAACCCGGTTGGCTTCATCAGGGAAAATTATCCAGAACGGCAACTACTAGACCCCTTTACAATGGATTTGACATCCCAGACTGCAGAATGGAGAGGCATCTTTTCTATCTGTGAAATTTATATGCATTTCCAAAGGCGAGTTAATTCCGGACCTCTAGTGCAAATTCACGAGGTGAGAACGTAGGTGCTACTAAATTCGGTTTCGAACCAGATCTTGGCCAGCTCAAAGTTGGATCCATTCTGACTATCACAGTAATGGCGATCATACTTATTCAGTACTTCTTTTCAAGAATGGAATTTGTCAATTGATAAGCACGCTTTAGATCTGTTCGTCGGTGCTCGAGGGTTCACTGTCTTCTAACATGGGAGGATCTTCTTTGTCTTCTAACATGGGAGGATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGCAGGATGCGATGTAGAAAAAGTAAGAATGGTCGCCTCTCCATACAGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACAGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTCCCCTCAGGAGACTGCAAGGTTTTTCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCAGCTGCAGTTGGGGTTGCATATCTGTTGGCCTTTGAAAGTGCAAATGATTTGACGATTTCTCAATTAGAAAATATTGAGTTGGATAGGTTGATTGAGAATGAGTATATGGGTATAAATAATGGTGTTTTGGATCAATCAGCAATCCTGCTTTCTGAACGTAATTGCCTCACATGCATCGACTGCAAGAGCAAGGAGTACAAGCTCATACATTCTCCCAAATTCAATGACAGCATCCAATGCCAAGTTTCAGAGTCATATAAAATATTACTGGCATTTTCAGGCTTGAGACATTCATTGCCAAGTACACCAGGGTATAATTCAAGAGTAGCCGAATGCAAAGAAGCTGCCAGGATTTTGCTGACAGCATCTGGAAAAACTTTCATGGAACCTCTTTTGTGCAATGTAGCACCAGAGGACTATATACTTCACAAGGAAAAGTTAGAAGGTGCTTTAGCTCGAAGATCAGAGCACTATTTCTCAGAGAATAAAAGAGTTTTTGCAGGGCTTAAATCATGGTCCAGTGGAAATTTGGAAGAATTTGGAAAGTTGATGTCAGAGTCTGGATTGAGTTCCATTCAGAACTATGAATGTGGTTGCGAACCATTAATACAACTTTATCACATTCTTTTGAAGGCACCAGGTGTGTATGGTGCACGCTTTAGTGGGGCGGGATTTCGAGGTTGTTGTGTGGCTTTTGTTAGTGCCAAACTTGCAGAAGATGCTGCCTTGTTTGTTCGTGAAGAGTATAAAAAGGTCCAACCAAAATTATTTTCACAAGCAGGCAATGTTGTCTTAATTTGTGAAACAGGAGATAAAGCTTGCATTATTTGATTCATAGCCTTAACTATGGCCTTCATGCTTTCATGTATTTTACTGGAAACTATTGTTTTTTATGTAAAATTTTGTGGCGTATAATATTTTACGTCCACGAGTTCATTCTAAGTTATTTTATCAGATGAACCCCAAACTTTGGGTAACAAGTCTTTCAAAACTCGGTAGATAAATTATTGAATTGCAACTATTCAGATCCACCTTTTTGGAGTGCATTACGAAAATACTTGCACGGCCCGTCCTTATGAAAAGGGAGAAGCGTTAAACGATCGATTTACATATTGGTAAATCCATTTGAGGTGTATCTATATATGTTCCTTATGGCCAGCTGAGAGATTAGGATGTGTTGGTTCTCCAAGTGATCTGGAGAAGTCGATGTAATAATGGGTCATACTTATGGTTTCTGTTTGTGTTTCTGAGGAAGCCAATTGTTGCAAGACTTTATGCTTATTTGTTGATCAAGTTAACTTAAAAAAGTTCCATGTAAGTTTACCCTGACTTGTCATTCCGAATTGGAAATTTCTTTCTTCTACAACTCAAATCTAATGCATCC

Ace file of the UniGene sp_v3.0_unigene17745

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	galactokinase [Arabidopsis thaliana] sp\|Q8VYG2.1\|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gb\|AAL59925.1\| putative galactokinase [Arabidopsis thaliana] gb\|AAM20366.1\| putative galactokinase [Arabidopsis thal	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	Identity
Sma3	Galactokinase	IPR000705	-	-
Sma3	GHMP kinase N-terminal domain	IPR006204	-	-
Sma3	GHMP kinase, C-terminal domain	IPR013750	-	-
Sma3	Mevalonate/galactokinase	IPR006206	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10700.1	GalAK galacturonic acid kinase chr3:3346789-3350863 REVERSE LENGTH=424	59%
RefSeq	Arabidopsis thaliana	NP_187681.2	galactokinase [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002304182.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS15

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 489 - 423

Fln protein: IRFRTRSWPAQSWIHSDYHSNGDHTYSVLLFKNGICQLISTL*ICSSVLEGSLSSNMGGSSLSSNMGGSSWPSAAEVERVRRSAAALAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVFLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQGIIGFIEGSGSFDSSGISSSAAVGVAYLLAFESANDLTISQLENIELDRLIENEYMGINNGVLDQSAILLSERNCLTCIDCKSKEYKLIHSPKFNDSIQCQVSESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKTFMEPLLCNVAPEDYILHKEKLEGALARRSEHYFSENKRVFAGLKSWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVSAKLAEDAALFVREEYKKVQPKLFSQAGNVVLICETGDKACII*

Protein Length: 490

Fln nts: TTCGGCACGAGGGCAAGTCAGAGCCGAGTATTCCTAATTGACAAAGAGTTCAATGTAGTGGGTTACACATTGCTTCTTAGCTTGATAGAGTACAAGACCCTTGTTCTGCGCGGAGACCTGGATAGGGCGAATGAGATTCTTCCCACGATTCCTAAGGAACAACTTAACAATGTGGCTCATTTTCTGGAGTCTCGTGGTATGCTGGATGAGGCGCTTGAAGTGGCTGTGGACCCTGATTACAAATTTGATCTAGCTATTCAACTTGGAAGAATTGGAGTAGCAAAGTCAATTGCAGTAGAAGCACAAAGTGAATCGAAATGGAAACATTTAGGAGAGCTAGCTATGTCTGCTGGAAAGTTAGACTTGGCAGAGGAATGTCTCAGCCATGCAGCTGATCTAAGTGGATTGTTGCTTCTCTACTCTGCTCTAGGAGATGCAGAAGGGATGGCCAAACTTGCCCAACTTGCAAGAGAGCAGGGGAAGAACAATGTTACATTTCTTTGTTTATTCATGCTAGGGAAATTAGAAGAATGCATCGATCTCTTGGTGGAGAGTAATCGCATACCGGAGGCTGCTTTTATGGCACGATCCTATCTACCAAGCAAGGTTTCAGAATTGGTCTCCATTTGGCGTAATGACCTAAGTAAGGTAAATCAAAAGGCTGCCGAATCTTTAGCAGATCCAGAGGACTATCCTAACCTCTTTGAAGACTGGCATTTGGCAATTGATGTTGAATCTAGGCTGGGAAGTTCAAGGAATGACTATCCTCCTGCGGAGGATTATCTAAAGTATGTTGGTAAAATGAATGTCGACCTTATAGAAGAGTTTAAAAATATGGAAGTCAATGGAGACGTCCCTTTTGAAAATGGAGATTCTGTTCACGAGGCACGAGATATCAATGAAGAGGATGTTCTTGATGAAATGCAGGACGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGGAGATTCAACTGAAGGAGAGGTTCATGTTGAAATGCAAGATGAAACCATTGATGGGGAGAAGTATGTAGAAGCAGAAGATTCTACTGAAGGAGAGGTTCTTGTTAATGGAAACGAGGCAGAAGAAGAGTGGGGTATGGACAATGAAGGAAACCAGCGCGCATGAACTGCCGATAGCAAGTGTATCATTGCAATCAAACCAATTTTTCAGTCTCGTGATATAAAATGATTATTTGGATTTTGTCTAGTTGTTCTAGCATAATGCTAGGATGTGTATTTCTGGGCTTCTCATTTCAGTAACTTACAGGAAGTAAAGTGTTACAAAGTGCAACGGAATTTCAAGGATTAATGGCTTGATCAATGTTTATGGTGGACAAGTGTGAGAAACGTGCCGAATAACCAGGTTCACATATGGAAAGCTATTGGATATATCCAAGCGGTGTTCTTTTAAGATATCTTGGGTCAATCCCACTTGAATTTAAGACCACTAGATGTGTTGGTCGTGAAAAAAGTCTGGGCTATTTTAGCCAAGATAAGAATGAGTAGGGCCCGAATGTCTAGTTGTAGCTGTTCATTTCTCCCACTTTTAAATATGTAGTTTTTTGGGTTTTTCAAAACGTGATAAGTTTTTGATCTAATGCATTCGTCTAAAATCAAACTGATTTTTCTTGGAAGACTTTATTTCCTCTGTTTTCTCCTACATATTTTGAAGTTTAGTTTATAGTCTGCAAAGAGATCCTCAAGCAGGATAAGATAACCCGGTTGGCTTCATCAGGGAAAATTATCCAGAACGGCAACTACTAGACCCCTTTACAATGGATTTGACATCCCAGACTGCAGAATGGAGAGGCATCTTTTCTATCTGTGAAATTTATATGCATTTCCAAAGGCGAGTTAATTCCGGACCTCTAGTGCAAATTCACGAGGTGAGAACGTAGGTGCTACTAAATTCGGTTTCGAACCAGATCTTGGCCAGCTCAAAGTTGGATCCATTCTGACTATCACAGTAATGGCGATCATACTTATTCAGTACTTCTTTTCAAGAATGGAATTTGTCAATTGATAAGCACGCTTTAGATCTGTTCGTCGGTGCTCGAGGGTTCACTGTCTTCTAACATGGGAGGATCTTCTTTGTCTTCTAACATGGGAGGATCTTCTTGGCCCTCTGCTGCAGAGGTTGAGAGAGTTAGAAGGTCGGCAGCTGCTTTGGCAGGATGCGATGTAGAAAAAGTAAGAATGGTCGCCTCTCCATACAGAATCTGTCCTCTTGGCGCTCACATTGACCATCAGGGTGGGACTGTGACAGCAATGACAATAAATAGGGGCATACTTTTAGGTTTTGTCCCCTCAGGAGACTGCAAGGTTTTTCTCCACTCTGGTCAGTTTGGTGGAGAAGTGCAGTTCAGAATTGACATTGATCTATGCAAAGGAGATCAAATTGGTGTAGATGAAGAATGTGGATGGGGGCGCTATGCAAGAGGCGCTGCATTTGCTCTAAAAAGGGCGGGTAAACATTTATATCAGGGTATTATCGGGTTTATTGAGGGATCAGGATCTTTTGATAGTTCAGGCATTAGCTCTTCAGCTGCAGTTGGGGTTGCATATCTGTTGGCCTTTGAAAGTGCAAATGATTTGACGATTTCTCAATTAGAAAATATTGAGTTGGATAGGTTGATTGAGAATGAGTATATGGGTATAAATAATGGTGTTTTGGATCAATCAGCAATCCTGCTTTCTGAACGTAATTGCCTCACATGCATCGACTGCAAGAGCAAGGAGTACAAGCTCATACATTCTCCCAAATTCAATGACAGCATCCAATGCCAAGTTTCAGAGTCATATAAAATATTACTGGCATTTTCAGGCTTGAGACATTCATTGCCAAGTACACCAGGGTATAATTCAAGAGTAGCCGAATGCAAAGAAGCTGCCAGGATTTTGCTGACAGCATCTGGAAAAACTTTCATGGAACCTCTTTTGTGCAATGTAGCACCAGAGGACTATATACTTCACAAGGAAAAGTTAGAAGGTGCTTTAGCTCGAAGATCAGAGCACTATTTCTCAGAGAATAAAAGAGTTTTTGCAGGGCTTAAATCATGGTCCAGTGGAAATTTGGAAGAATTTGGAAAGTTGATGTCAGAGTCTGGATTGAGTTCCATTCAGAACTATGAATGTGGTTGCGAACCATTAATACAACTTTATCACATTCTTTTGAAGGCACCAGGTGTGTATGGTGCACGCTTTAGTGGGGCGGGATTTCGAGGTTGTTGTGTGGCTTTTGTTAGTGCCAAACTTGCAGAAGATGCTGCCTTGTTTGTTCGTGAAGAGTATAAAAAGGTCCAACCAAAATTATTTTCACAAGCAGGCAATGTTGTCTTAATTTGTGAAACAGGAGATAAAGCTTGCATTATTTGA___TTCATAGCCTTAACTATGGCCTTCATGCTTTCATGTATTTTACTGGAAACTATTGTTTTTTATGTAAAATTTTGTGGCGTATAATATTTTACGTCCACGAGTTCATTCTAAGTTATTTTATCAGATGAACCCCAAACTTTGGGTAACAAGTCTTTCAAAACTCGGTAGATAAATTATTGAATTGCAACTATTCAGATCCACCTTTTTGGAGTGCATTACGAAAATACTTGCACGGCCCGTCCTTATGAAAAGGGAGAAGCGTTAAACGATCGATTTACATATTGGTAAATCCATTTGAGGTGTATCTATATATGTTCCTTATGGCCAGCTGAGAGATTAGGATGTGTTGGTTCTCCAAGTGATCTGGAGAAGTCGATGTAATAATGGGTCATACTTATGGTTTCTGTTTGTGTTTCTGAGGAAGCCAATTGTTGCAAGACTTTATGCTTATTTGTTGATCAAGTTAACTTAAAAAAGTTCCATGTAAGTTTACCCTGACTTGTCATTCCGAATTGGAAATTTCTTTCTTCTACAACTCAAATCTAATGCATCC

Fln Alignment:

Contig17745___WPXXXXXXXXXXXXXXLAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMTINRGILLGFVPSGDCKVFLHSGQFGGEVQFRIDIDLCKGDQIGVDEECGWGRYARGAAFALKRAGKHLYQXXXXXXXXXXXXXXXXXXXXAAVGVAYLLAFESANDLTISQLENIELDRLIENEYMGINNGVLDQSAILLSERNCLTCIDCKSKEYKLIHSPKFNDSIQCQVSESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKTFMEPLLCNVAPEDYILHKEKLEGALARRSEHYFSENKRVFAGLKSWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVSAKLAEDAALFVREEYKKVQPKLFSQAGNVVLICETGDKACII
B8LS15_______________WPSAAEVERVRRSAAALAGCDVEKVRMVASPYRICPLGAHIDHQGGTVTAMAINRGILLGFVPSEDCKVLLRSGQFGGEVQFRIDNDLCKGDQIGVDEECGWGRYARGAAFALQRAGKHLYQGIIGFIEGSGSFDSSGISSSAAVGVAYLLAFESANDLTISQLENIELDRLIENEYMGINNGVLDQSAILLSQRNCLTCIDCKTKEYKLIHPPKVNDNSQWQEPESYKILLAFSGLRHSLPSTPGYNSRVAECKEAARILLTASGKTFMELLLCNVAPEDYILHKEKLEGALARRSEHYFSENKRVFAGLESWSSGNLEEFGKLMSESGLSSIQNYECGCEPLIQLYHILLKAPGVYGARFSGAGFRGCCVAFVDANFAEDAALFVREEYKKVQPKLFSQAGTVVLICETGDKACII

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
591		75		25	1.0
901	10		90		0.90298
902	90	10			0.90298
904			90	10	0.90298
905	90			10	0.90298
1185	88		11		0.923564
1189		21		78	1.0
1191	78	21			1.0
1192			21	78	1.0
1195		21		78	1.0
1196		21		78	1.0
1200	78	21			1.0
1202			21	78	1.0
1204	14	7		78	0.999974
1205	7	14	78		0.999974
1208	7			78	0.999974
1480	33	66			0.997452
3100	84		15		1.0
3130	90		9		0.999842
3453		10		90	0.90298
3645	83			16	0.994512
3734		87		12	0.992554
3780		6	93		0.999453
3806		70	29		1.0
3848	28	71			1.0
3849	33			66	1.0
3850		33		66	1.0
3853	80			20	0.995493
3854	40		40	20	1.0
3855	50		25	25	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain