SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17743

Length: 2145 nt

UniGene Fasta

>sp_v3.0_unigene17743
TGAAAGGCCCACCTTCGGCTAAAGTTCCAAAAGTCGCACGCAACCAACCAGAAATTTGGACCTTTCTCGCGTTTAGGCCTTACACACGCATCCGCTCTATAAGCGACGGAGCTTTTTATATATCCTCCTCGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAATTCATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACTGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGTGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCTGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGGGCTCTTATTGTATCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAACGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAAATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGAGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATTAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATACTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCCATTCATTAGCC

Ace file of the UniGene sp_v3.0_unigene17743

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aspartate aminotransferase n=1 Tax=Picea sitchensis RepID=A9NUJ0_PICSI	-	-	0.0	95%
FL-Next	sp=Aspartate aminotransferase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%

Source	ECs	Term	Type	e value	Identity
Sma3	Aspartate transaminase.	EC:2.6.1.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Cysteine and methionine metabolism	00270	%
Sma3	Arginine and proline metabolism	00330	%
Sma3	Tyrosine metabolism	00350	%
Sma3	Phenylalanine metabolism	00360	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	%
Sma3	Carbon fixation in photosynthetic organisms	00710	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	GOs	Term	Type	Identity
Sma3	L-aspartate:2-oxoglutarate aminotransferase activity	GO:0004069	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cellular amino acid metabolic process	GO:0006520	Biological Process	-
Sma3	biosynthetic process	GO:0009058	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class I/classII	IPR004839	-	-
Sma3	Aspartate/other aminotransferase	IPR000796	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 2	IPR015422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G30970.1	ASP1 aspartate aminotransferase 1 chr2:13179012-13181686 FORWARD LENGTH=430	78%
RefSeq	Arabidopsis thaliana	NP_180654.1	aspartate aminotransferase [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002321073.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUJ0

Fln msg:

Fln protein: MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALIVSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI*

Protein Length: 433

Fln nts: TGAAAGGCCCACCTTCGGCTAAAGTTCCAAAAGTCGCACGCAACCAACCAGAAATTTGGACCTTTCTCGCGTTTAGGCCTTACACACGCATCCGCTCTATAAGCGACGGAGCTTTTTATATATCCTCCTCGGCAGCGGACGGGGCACTGCGCCATTATATTATTGCACAGCAATAACAGAAAGGAAAAATTC_-_ATGGCGATGGCGATTGCGATGAGCAGATCCAATCTGGGAAGGGGCATAAGACTGATGTCCACTTCTGGATGGTGGAAAACTGTAGAGCCAGCTCCCAAAGACCCCATTCTCGGAGTCACTGAAGCCTTTTTAGCAGATACAGATCCTAGCAAGGTCAATGTTGGCGTGGGTGCGTATCGCGATGATCAAGGGAAGCCAGTGGTTCTTCAATGTGTGCGTGAGGCTGAGAGGCGTATTATGGGCAAAGAAAACATGGAATATCTACCCATGGGAGGAAGTGTGAAGATGGTTGAAGATTCTATCAAACTTGCATATGGAGAAAATGCAGATGTCTTGAAAGATAAGCGTGTTGCAGCTGTCCAAGCTCTATCTGGCACTGGCGCTTGCCGTCTTTTTGCAGAGTTCCAGAAACGGTTTCGACCTGAGTCTCAGATTTACATACCAGTCCCTACCTGGGCCAATCACCACAATATCTGGAGAGATGCCCATGTACCGCAGAGAACTTTCCATTATTACCATCCAGAGACTAAGGGTTTAGACTTTGCATCTCTCATGGATGATGTGAAGAATGCTCCCAATGGTTCCTTTTTCTTGCTTCATGCATGTGCTCACAATCCCACAGGTGTAGATCCAACAGAGGAGCAATGGAAGGAAATTTCTTATCAATTTAAGGTGAAAAATCACTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTGCAAGTGGTGACACGGACAGAGATGCTAAGGCAATCAGGATATTCTTGGAGGATGGTCACCAGATTGCATGTGCACAGTCTTTTGCAAAAAACATGGGCTTGTATGGACAGAGGGTAGGTTGTCTAAGTGTTATATGCGATGATGCAAAACAGGCAGTGGCAGTTAAGAGCCAGCTTCAACAGATTGCTCGGCCAATGTACAGTAATCCACCTGTTCATGGGGCTCTTATTGTATCTTCCATCCTGAGTGATCCAGATCTCAAAGCTCTCTGGCACAAGGAGGTCAAGGTTATGGCAGACCGTATTATTGGAATGAGAGAATCTTTGCGAGGCAACCTTGAAAAGCTGGGGTCTCCTCTCAGTTGGAACCATGTTACTGAACAGATTGGAATGTTTTGCTATAGCGGTATGACTCCAGAGCAAGTTGACCGCTTGACGAGTGAATTTCACATTTATATGACACGAAATGGCCGCATAAGTATGGCAGGTGTTACTACCGGCAATGTTGAATACTTGGCAAATGCTATCAACGAGGTCACAAAGTCATCAGAAAAAGAGATGAAAGTTGGTGCAATTTAA___ATCTAATTTTTGGCAAACATCACAATTTTATTATTGCATCATCATATGAGAATTTTAGAGCTTAGTTTTATTTTTGTGCTAGTGCACCACCATCGGAGACACCTTTGAATAAGTAGCCTATTGTTTAGGCATAGTCATTAGCAAACTTAGTTTTTGTACTCCGTTTTAGGGGTACAGTAGGTTTCTCATGATAGTGTAGGATAAACGTTTGCTAGTGCACCACTATTGGAGATACCTTTGAATAATTGGCCTATTGTTTAGGCATAGTCATTAACAAAAATAGTTTTGTACTCCATTTAAGGGGTGCAGTCGGTTTCTCATGAAAGTGTAGGATACAGATTTGAGGTTTTTTTATGGACGTTTCCTTTTATGGTTGTATACTGTCAAGAGGACAATTCACATACCTTTGTACTTTCCTTTCTCAAAAAGTGGGATGTTATTAAATTTTGAAGTTTTTTATTATCTTTTAGAAAATTGTGGTATTTTATTCTGTACCTGCTGTTCTCTATTTGTTGGCTAGAGCTGGAAACTATTCAGTGGTCACAAGAAGAGTGTCATGTCTAGGAGAGGAGAATGCAGATCTCCTTTTGAGTTGTTTGTTAATTCTGTTTAACCATAAAGGAGAATCAAGTTGATAATGATATCCATTCATTAGCC

Fln Alignment:

Contig17743___MAMAIAMSRSNLGRGIRLMSTSGWWKTVEPAPKDPILGVTEAFLADTDPSKVNVGVGAYRDDQGKPVVLQCVREAERRIMGKENMEYLPMGGSVKMVEDSIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDAHVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHFPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALIVSSILSDPDLKALWHKEVKVMADRIIGMRESLRGNLEKLGSPLSWNHVTEQIGMFCYSGMTPEQVDRLTSEFHIYMTRNGRISMAGVTTGNVEYLANAINEVTKSSEKEMKVGAI
A9NUJ0_______________MAMAMAMSRSNAGRGIRLMSTSGWWKAVEPAPKDPILGVTEAFLADTDPNKVNVGVGAYRDDQGKPVVLQSVREAERRILGKENMEYLPMGGSVKMVEESIKLAYGENADVLKDKRVAAVQALSGTGACRLFAEFQKRFRPESQIYIPVPTWANHHNIWRDANVPQRTFHYYHPETRGLDFASLMDDVKNAPNGSFFLLHACAHNPTGVDPTEEQWKEISYQFKVKNHYPFFDMAYQGFASGDTDRDAKAIRIFLEDGHQIACAQSFAKNMGLYGQRVGCLSVICDDAKQAVAVKSQLQQIARPMYSNPPVHGALLVYSILSDPDLKALWHKEVKVMADRIIGMREALRGNLENLGSPLSWNHVTDQIGMFCYSGMTPEQVDRLTSEFHIYLTRNGRISMAGVTTGNVEYLANAIHEVTKSSEKELKAGAV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
1115	66		33		0.997452
1868	64	35			1.0
2134		33		66	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain