SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17694

Length: 1471 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17694

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Tau class glutathione S-transferase n=2 Tax=Pinus RepID=D3YLT8_9CONI	-	-	98%
FL-Next	tr=Tau class glutathione S-transferase; Pinus brutia.	-	-	98%
Sma3	Tau class glutathione S-transferase	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity	GO:0016740	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Glutathione S-transferase, C-terminal-like	IPR010987	-	-
Sma3	Glutathione S-transferase, N-terminal	IPR004045	-	-
Sma3	Glutathione S-transferase/chloride channel, C-terminal	IPR017933	-	-
Sma3	Glutathione S-transferase, C-terminal	IPR004046	-	-
Sma3		IPR012335	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G78380.1	ATGSTU19, GST8, GSTU19 glutathione S-transferase TAU 19 chr1:29486659-29487819 REVERSE LENGTH=219	54%
RefSeq	Arabidopsis thaliana	NP_565178.1	glutathione S-transferase TAU 19 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002317606.1	predicted protein [Populus trichocarpa]	53%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D3YLT8

Fln msg:

Fln protein: MENQVKVLNLWASPFGLRVLVGLEEKGVKYEYQEENLASKSELLLKMNPIHKKIPVLIHNDKPVLESLIIVEYIDEAWPNTNPFMPSSAYERARARFWADFVDKKLYDNGGALIMKCKGEAQEEAKRNMLEYLGLLEGALDELSGGIKPYFGGEKFGYMDIAFIPFASWFQAWEVMGNWKIPLETQFPRLHEWVNACMERESVKKVLPHPEKVAEFAMQMRQRFVGSD*

Protein Length: 230

Fln nts: ATGGGGGAACTTCTAAATTTTTTAATAGCCTGGTAAACAACCTGATAAAGCAACACACTTCTCACATGAACCAAAAGTAATGAGTGGTTATGAAACAAGGAGGAGCCACATCTTCTCTACCATCATCCCAAGGTTGCATACCAGCAAAGATCAATGGCGGTGATCTTTAGCGCACTGTGACGTGATTGCTCACGCACTGGTGAGTCCCAGCTGAATGGTTCAGCGCCTTCTCGATCACACACATCCTGTTCCTTATTCTTATGGACCACGGCATCTCTCTCTCACTCACTATATAACAAGCTATTTGGAATGTAACCAAACATTCAAGCAAGGGGTACAGACATCCATTGATCCAGAGATTAGTGTGGTCTGAATCAGAGATAAGTTTGGTCTGGTCTGAAGCGTTTTCAGTTTTTACAGAGGGAAAA_-_ATGGAGAATCAGGTTAAGGTGTTGAACTTATGGGCCAGTCCATTTGGTCTTAGGGTTTTGGTTGGATTGGAAGAGAAGGGTGTCAAATATGAATACCAAGAAGAGAATCTGGCCTCTAAGAGTGAATTGTTATTGAAAATGAATCCTATTCACAAGAAGATACCAGTACTCATCCACAATGACAAGCCTGTCTTGGAGTCTCTGATCATAGTTGAATACATAGATGAGGCTTGGCCCAACACCAATCCTTTTATGCCTTCCTCTGCTTATGAAAGAGCCAGAGCAAGATTTTGGGCGGATTTTGTAGACAAGAAGTTATATGATAATGGAGGTGCTCTCATTATGAAATGCAAAGGAGAAGCCCAGGAAGAGGCTAAGCGTAACATGTTGGAGTACCTGGGATTGTTGGAAGGAGCGCTTGATGAGCTTTCTGGAGGCATTAAGCCTTATTTTGGAGGGGAGAAGTTTGGGTACATGGATATTGCATTCATTCCATTTGCCTCTTGGTTCCAAGCCTGGGAGGTAATGGGTAACTGGAAGATACCATTAGAGACTCAGTTCCCAAGGCTTCATGAGTGGGTGAATGCATGTATGGAGAGAGAGAGTGTCAAGAAAGTCCTTCCACACCCTGAAAAGGTTGCAGAATTTGCTATGCAGATGAGGCAGAGATTTGTTGGCTCTGACTGA___AAAAAACTTTTATATCTATAAATATATGTATGGTATCTCATATATGGAGTAGAGTAGAGAGTCTGGACTGAACCAAATTATTGTGCTGTACTTTTTGTGTGTTATGATAGGAACAGTGTTACAGAAGTCATGTCCCTTTGAATCCATAATAAATCATCCATTTCCTGTTGTTATATGCTTTGATGTTCATGTCATATTTTTGCACATATTTGTTCTGTTTTCTGTAAATATGAGCCATTGATGTTATGATTTTATGGATTCATCATAAGGTTCTGTACATACAAGTTTCATGGATGCTTTGTGAAAAGATGTTAATGATGTTTTCCTCACCCTCTGGGTTCTGATGTCTGATCTAT

Fln Alignment:

Contig17694___MENQVKVLNLWASPFGLRVLVGLEEKGVKYEYQEENLASKSELLLKMNPIHKKIPVLIHNDKPVLESLIIVEYIDEAWPNTNPFMPSSAYERARARFWADFVDKKLYDNGGALIMKCKGEAQEEAKRNMLEYLGLLEGALDELSGGIKPYFGGEKFGYMDIAFIPFASWFQAWEVMGNWKIPLETQFPRLHEWVNACMERESVKKVLPHPEKVAEFAMQMRQRFVGSD
D3YLT8_______________MENQVKVLNLWASPFGLRVLVGLEEKGVKYEYQEENLASKSELLLKMNPIHKKIPVLIHNDKPVLESLIIVEYIDEAWPNTNPFMPSSAYERARARFWADFVDKKIYDNGGALIMKCKGEAQEEAKRNMMEYLGLLEGALDELSGGMKPYFGGEKFGYMDIAFIPFASWFQAWEVMGNWKIPLETQFPRLHEWVNACMERESVKKVLPHPEKVAEFAMQMRQRFVGSD

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
691		66		33	0.997452
733		20		80	0.995493
749	83			16	0.994512
767			6	93	0.999153
790	6		93		0.999264
920		3		96	0.991164
930		24		75	1.0
953	3		96		0.99245
955		3	96		0.99245
1031	95			4	0.997494
1056	6	93			0.999364
1073	56		43		1.0
1091	68		31		1.0
1158		11		88	0.923564
1160	88		11		0.923564
1162	25	25			1.0
1180	50		50		1.0
1193		85	14		0.993533
1210	90		9		1.0
1287	2		97		0.999161
1291	1	10	1	87	1.0
1292		8		90	1.0
1293	92		7		0.999999
1294	10	16	6	63	1.0
1296	30	15		53	1.0
1297	27		63	9	1.0
1298	33	66			1.0
1299	25			75	1.0
1300	12		12	75	0.975346
1301		14		85	0.993533
1328	66	33			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain