SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17688

Length: 1534 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17688

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Annexin P35 n=1 Tax=Elaeis guineensis RepID=B3TLY9_ELAGV	-	-	0.0	63%
FL-Next	sp=Annexin; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	73%
Sma3	Annexin	-	-	7.708e-30	-

Source	Gene names
Sma3	80A08_19; 80A08_20; AN34; AN35; ANN1; ANN2; ANN3; ANN6; ANN7; ANNAT1; ANNAT2; ANNAT3; ANNAT6; ANNAT7; ANX23-ATH; AT1G35720; ATOXY5; Ann1; AnnGh1; AnnGh2; Anx1; Anx3; AnxLt1; At1g35720; At2g38760; At5g10220; At5g10230; At5g12380; At5g65020; B1040D06.12; B1

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	calcium-dependent phospholipid binding	GO:0005544	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	polysaccharide transport	GO:0015774	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Annexin	IPR001464	-	-
Sma3	Annexin, plant	IPR009118	-	-
Sma3		IPR015472	-	-
Sma3	Annexin repeat, conserved site	IPR018252	-	-
Sma3	Annexin repeat	IPR018502	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G35720.1	ANNAT1, OXY5, ATOXY5 annexin 1 chr1:13225304-13226939 FORWARD LENGTH=317	56%
RefSeq	Arabidopsis thaliana	NP_174810.1	annexin D1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002302291.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNL2

Fln msg:

Fln protein: MSTITVPVPIPTPSEDSERLRKAFEGWGTNEKSIIQILGHRTAAQRKVIRQSYFQLYEEDLLKRLESELSSDFEKVVFLWVLDPAERDAVISHDAIKKWNAKNISLLEISSARSSAELLMVRQAYHIRYKKSLEEDVAAHTSGNFRKLLVALVSSYRYEGPEVDMHLASYEAKKLSESLTSKKDNYEELIRIISTRSKAQLNATFNCYKDVYGHHINKDLKSQAPEDFQDAVRVVIKCICCPEKHFTKVLRLAIEKLGTDEDALTRVVVTRAEVDMKHIKEAYAKRTSKTLEHAIASETSGDYQDFLLTLIGKGHA*

Protein Length: 318

Fln nts: ATGGGGAAGGGGACAACGAACATATTTTTGTCACATATGAAACAAATATTGGTTGCTTGTGAGCGTCAAATAGGAGAACCAGCGGCTGTTTTGTTGAGCTACTCGATTTTAGTAAATCAAGAATTCATCAGCTGTAAATTGAGGCGTTTGATTTCAGTTTAAGTTACATTTTGGTAAAGTTGGTCGACCTCCATTGCTGAAGATATTGTGCGAGGTATCGGATTTGTGGAGAAG_-_ATGTCAACAATTACAGTGCCAGTTCCAATACCGACCCCATCTGAAGACTCTGAACGCCTGAGGAAGGCTTTTGAAGGGTGGGGCACAAATGAGAAGTCAATCATACAAATATTAGGACATAGAACTGCAGCACAACGCAAAGTAATCCGTCAAAGTTATTTTCAACTGTACGAAGAGGATCTCTTGAAGCGATTAGAATCTGAGCTTTCAAGTGACTTTGAGAAAGTTGTATTCCTTTGGGTACTAGATCCAGCTGAACGTGATGCGGTCATATCTCATGATGCAATAAAGAAGTGGAATGCAAAGAATATATCGCTTTTAGAAATTTCCAGTGCTCGATCTTCGGCTGAACTATTGATGGTGAGGCAAGCATATCATATTCGGTACAAAAAGTCCCTCGAAGAAGACGTGGCTGCACATACAAGTGGAAACTTCCGTAAGTTGCTGGTAGCACTTGTAAGTTCATATCGGTATGAAGGTCCGGAAGTGGATATGCATTTGGCAAGTTATGAAGCAAAGAAGCTAAGTGAATCTTTAACAAGCAAAAAAGATAATTACGAAGAACTTATTCGAATAATAAGTACAAGGAGCAAAGCTCAATTGAATGCCACATTCAATTGTTACAAGGATGTGTATGGTCATCATATTAACAAGGACTTGAAGAGTCAAGCACCTGAAGATTTCCAAGATGCAGTGCGAGTTGTGATCAAGTGTATTTGCTGTCCTGAAAAACACTTCACAAAGGTTTTGCGCTTAGCGATAGAAAAACTCGGGACAGATGAAGATGCACTAACACGGGTGGTTGTAACACGTGCGGAAGTTGACATGAAGCATATCAAAGAGGCATATGCTAAGAGGACCAGCAAGACTTTGGAACATGCAATAGCGTCTGAAACCTCTGGAGACTACCAGGATTTTTTGCTTACATTGATAGGCAAAGGTCATGCTTAA___GCTCATTCATCCGAATGGCACCTTTTGAAACATTTATGTCTGAAATGAAGAGCTTTAGAATCTTAATAATTTCAAGCACACAATCTGTAGACACTTTTCTTTGAGTAGTTTCAAAGTTGTCTTGACTCGGATCATAAACCTTTAAGTTTAGACCCTGGTGATTCTAAGTATACATGCTTACGCAAAATCATTTGTTATTGTTGACTGGATTTTGATTACACCATTTCTTTTCATTGTTCTCCATTGGATCTACGTCATAAATCCGTAGACCTGCTATATAACACTCAACCCATACAACCTATTTTTTGGAAAAATTTACACATGCCATAATTTTTTATTTTTGCAGACA

Fln Alignment:

Contig17688___EDSERLRKAFEGWGTNEKSIIQILGHRTAAQRKVIRQSYFQLYEEDLLKRLESELSSDFEKVVFLWVLDPAERDAVISHDAIKKWNAKNISLLEISSARSSAELLMVRQAYHIRYKKSLEEDVAAHTSGNFRKLLVALVSSYRYEGPEVDMHLASYEAKKLSESLTSKKDNYEELIRIISTRSKAQLNATFNCYKDVYGHHINKDLKSQAPEDFQDAVRVVIKCICCPEKHFTKVLRLAIEKLGTDEDALTRVVVTRAEVDMKHIKEAYAKRTSKTLEHAIASETSGDYQDFLLTLIGK
A9NNL2_______________EDSESLRKAFEGWGTNEKLIIEILGHRTAAQRRAIRQAYTQLYEEDFLKRLQSELTREFERALFLWSLDPPERDALLAHESIKKWSPKNRSLIEISCARSSSELWLVRQAYHVRYKKSLEEDIASHTQGDFRKLLVQLVSSYRYEGPEVDMRLAKSEAKQLHEAIEDKAFGNEEFIRIITTRSKAQLNATFNNYKDEYGHHINKDLKNEKPEEFLESLRVVIKCICFPERYFAKVLRLAIDKLGTEEEALIRVVVTRAETDMNNIKEEYHKRTSKTLEHAIAADTSGYYEEFLLTLIGK

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
900	75		25		0.996473
1029	12			87	0.992554
1031	87	12			0.992554
1035		12	87		0.992554
1036		12	87		0.992554
1048	14		85		0.993533
1070		85		14	0.993533
1090			14	85	0.993533
1091	85			14	0.993533
1092	85			14	0.993533
1095			85	14	0.993533
1100	71			28	1.0
1102		71	14		0.984337
1103	71	14			0.984337
1104	85			14	0.993533
1106	85			14	0.993533
1108	14			71	0.984337
1109		14		85	0.993533
1110			14	85	0.993533
1111		28	71		1.0
1112	14	14	71		0.984337
1133	80		20		0.995493
1172	25		75		0.996473
1174		66	33		0.997452
1353	27	72			1.0
1497			77	22	0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain