SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17660

Length: 1926 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17660

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Chalcone--flavonone isomerase n=2 Tax=Pyrus RepID=CFI_PYRCO	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Sma3	Chalcone isomerase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Chalcone isomerase.	EC:5.5.1.6	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Flavonoid biosynthesis	00941	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	AT3G55120.1; At3g55120; At5g66220; CFI; CFI-BN-1; CFI-BN-2; CFI-BO-1; CFI-like-BN-1; CFI-like-BO-1; CH; CHI; CHI-1; CHI-2; CHI-3; CHI1; CHI1A; CHI1B1; CHI1B2; CHI2; CHI2-A; CHI2-B; CHI3; CHIA; CHIB; CHIC; FrCHI17; FrCHI23; GSVIVT00029513001; K2A18.30; OsI

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plant-type vacuole membrane	GO:0009705	Cellular Component	-
Sma3	extrinsic to endoplasmic reticulum membrane	GO:0042406	Cellular Component	-
Sma3	chalcone isomerase activity	GO:0045430	Molecular Function	-
Sma3	flavonoid biosynthetic process	GO:0009813	Biological Process	-
Sma3	response to UV-B	GO:0010224	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Chalcone isomerase, subgroup	IPR003466	-	-
Sma3	Chalcone isomerase, 3-layer sandwich	IPR016088	-	-
Sma3	Chalcone isomerase, orthogonal bundle	IPR016089	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G55120.1	TT5, A11, CFI Chalcone-flavanone isomerase family protein chr3:20430248-20431415 REVERSE LENGTH=246	56%
RefSeq	Arabidopsis thaliana	NP_191072.1	chalcone--flavonone isomerase 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002315258.1	chalcone isomerase [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADH5

Fln msg:

Fln protein: MTVGSVAGGMDVEGVTFPPTVAPMGSSKELVLGGAGVRGLMIEGKFVTFTAIGVYIEKSIIPHLGFKWKYSTAEELVNRVDFFMDIVTCPYEKFVRVTLVLPLSGAQYSEKVGEGCKAAWEAAGIYGEAEANAIEQFKEIFKDQNFPPGSSILFSISPTGLVIAFSKDGSIPEKATAVIENRIMAEGVLASIVGKSGVSPAAKASIADRVSKLYFPELDRCFSTVLNGVELEGIAFPPTVRPPGATKDLVLGGAGVRQLPIEGKFITFTAIGIYIDSAIVPHLASKWKGKTTEELNDTEEFFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWEAAGIYGKAEAEAIEDFKKAFKDQNFPPGSSILFTISPTGLAIAFSEDSSIPENGRAVIKNRVLAQGVLASIIGKNGVSPAARAALAARLSQVWTVID*

Protein Length: 439

Fln nts: ATGGGGATGGTTTGAGGCTTCGCTGCACCTTCAGGTCAAGAAACCCAGTACCAAGGACCGAATCCTAGAAATATAAATATTCAAAATAAGAAAATACCTACTGTTGCGCTGAACCTTCTAAACCATGCAAGGTTGTTGGAGGTGGGTAAGTCGCCACGTGCAGATGGTAGATGCAGCGGCTCTTCATACATTCAATTTCTTGTCTGTCTGGGTCTTCCCCCATTATAAATAATGGAACCATGAGTGATCAAACCATCTATACCCAAATCCCAAATGTACGCAAGCCATTTTTGATTTTGGGGTGGGATTTTTCAGAAACTGATTTCGATTCAAACTCTCATAATATCTAGCAGCA_-_ATGACGGTGGGTTCAGTGGCCGGTGGGATGGATGTTGAAGGCGTCACGTTTCCTCCTACTGTGGCGCCCATGGGATCCAGTAAGGAACTCGTTCTCGGAGGAGCTGGTGTTCGAGGGCTCATGATCGAGGGGAAATTCGTCACGTTTACAGCAATTGGTGTTTATATCGAGAAGTCCATTATCCCCCACCTTGGTTTCAAATGGAAGTACAGCACGGCCGAAGAGCTGGTGAATAGGGTGGATTTTTTCATGGACATTGTCACCTGTCCATATGAGAAATTCGTGAGAGTAACACTCGTCTTACCGCTCTCTGGAGCTCAGTACTCTGAAAAAGTGGGCGAAGGGTGTAAGGCAGCTTGGGAAGCTGCAGGCATATATGGCGAAGCTGAAGCCAATGCGATCGAGCAGTTTAAGGAGATTTTTAAGGACCAGAATTTCCCCCCTGGTTCCTCCATTTTGTTTTCTATTTCGCCTACCGGGTTAGTGATTGCGTTCTCTAAAGATGGTTCGATTCCCGAGAAGGCCACAGCAGTGATAGAGAACAGGATCATGGCTGAAGGGGTCCTCGCATCTATCGTTGGCAAAAGTGGTGTATCTCCTGCCGCCAAGGCTTCAATCGCAGATCGGGTTTCCAAGCTGTATTTTCCCGAGCTGGACCGCTGTTTCTCTACTGTGCTCAACGGCGTGGAGCTTGAGGGCATCGCATTTCCACCCACGGTTCGACCCCCGGGGGCCACAAAAGACCTCGTACTGGGAGGAGCTGGTGTTCGACAGCTACCGATCGAAGGCAAGTTCATCACCTTTACGGCTATTGGAATTTACATCGACAGCGCCATCGTTCCTCACCTCGCAAGCAAGTGGAAAGGGAAGACGACTGAGGAATTGAATGATACAGAAGAGTTCTTCATGGACATTGTTACCTGCGAATACGAAAAATTCACGAGAGTAACCATGGTTCTCCCGTTAACCGGAATTCAGTACTCTGAAAAGGTCACCGAGGGCTGCAAGGCTGCATGGGAGGCTGCAGGAATATATGGCAAGGCCGAAGCCGAGGCCATCGAAGATTTCAAAAAGGCATTCAAGGATCAGAATTTCCCCCCTGGATCTTCCATTCTCTTCACGATTTCGCCCACAGGCTTGGCGATTGCATTCTCTGAAGACTCTTCGATTCCGGAGAACGGCAGAGCAGTGATAAAGAACCGAGTGCTTGCGCAAGGAGTTTTGGCTTCAATTATTGGGAAAAATGGTGTATCTCCAGCAGCCAGAGCTGCATTGGCGGCTAGACTCTCTCAAGTTTGGACAGTAATCGATTGA___GGGAGTGGACGAAAGAAATCTGGCTGGGATAGAACTCTGTCATGGTGATTAAAGCGGGGTTCAGTTATTTGAGGCCCTTCCATCTAGGAGCATGGCCGCCCGTCATCAAATTTCTGCCCTACGATGAATAATGAATTCTATGTATGCTTCAATTTTTGTTTTAAAATGTTTTGTTTACTGCTTCAGTGCTATGAACCCCGTCTTGAGTTAACACCATGTACACTATATAATATATATTCTATCTCTATCTCTATGAT

Fln Alignment:

Contig17660___MTVGSVAGGMDVEGVTFPPTVAPMGSSKELVLGGAGVRGLMIEGKFVTFTAIGVYIEKSIIPHLGFKWKYSTAEELVNRVDFFMDIVTCPYEKFVRVTLVLPLSGAQYSEKVGEGCKAAWEAAGIYGEAEANAIEQFKEIFKDQNFPPGSSILFSISPTGLVIAFSKDGSIPEKATAVIENRIMAEGVLASIVGKSGVSPAAKASIADRVSKLYFPELDRCFSTVLNGVELEGIAFPPTVRPPGATKDLVLGGAGVRQLPIEGKFITFTAIGIYIDSAIVPHLASKWKGKTTEELNDTEEFFMDIVTCEYEKFTRVTMVLPLTGIQYSEKVTEGCKAAWEAAGIYGKAEAEAIEDFKKAFKDQNFPPGSSILFTISPTGLAIAFSEDSSIPENGRAVIKNRVLAQGVLASIIGKNGVSPXXXXXXXXXXSQVWTVID
D5ADH5_______________MTVGSVASGMDVEGVAFSATVTPPGSTKELVLGGAGVRGLMIEGKFVTFTAIGVYIEKSIVPHLALKWKDSTAEDLGNRVDFYMDIVTCPYEKFTRVTLILPLSGAQYSEKVSEGCKAAWEAAGIYGEAEAKAIEQFKDIFQDQNFPPCSSILFTISPTRLVIAFSKDGSIPEKAAAVIENRIMAEGVLASIIGKSGVSPPAKASIADRVSKLYFPELDHCFATVLNGVELEGIAFPPTVRPPGGTKDLVLGGAGVRQLPIQGKVITFTTIGVYIDSAIVPYLANKWRGKTIEELNDSSDFFMDIVTCEYEKFTRVTMILPLTGIQYSEKVTEGCKAAWEAAGIYGKAEAEAIEEFKQAFKDQNFPPGSSILFTISPTGLAIAFSEDCSIPEKGRAVIKSRVLAQGVLASIIGKHGVSPAARASLAARLSQVWTATD

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1451		93		6	0.999264

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain