SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17628

Length: 935 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17628

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Casein kinase, putative n=1 Tax=Ricinus communis RepID=B9RK86_RICCO	-	-	1.0e-38	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	57%
Sma3	Putative casein kinase I	-	-	3.528e-18	-

Source	Gene names
Sma3	ADK1; AT4g08800; AT4g14340; AT4g28540; AT4g28860; AT4g28880; At1g03930; At1g04440; At1g72710; At1g72710/F28P22.10; At2g19470; At3g23340; At4g08800; At4g14340; At4g26100; At4g28540; At4g28860; At5g44100; At5g57015; B1114B07.27-1; B1114B07.27-2; CHLREDRAFT_

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plasmodesma	GO:0009506	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G72710.1	CKL2 casein kinase 1-like protein 2 chr1:27372553-27376178 FORWARD LENGTH=465	9.99995e-41	49%
RefSeq	Arabidopsis thaliana	NP_177415.1	casein kinase 1-like protein 2 [Arabidopsis thaliana]	2.0e-40	49%
RefSeq	Populus trichocarpa	XP_002329062.1	predicted protein [Populus trichocarpa]	9.94922e-44	53%

Full-Lengther Next Prediction

SNPs (tot: 29)

Position	A %	C %	G %	T %	Probability
499		10	90		0.90298
500			90	10	0.90298
501		10		90	0.90298
504			90	10	0.90298
505	90	10			0.90298
506	90	10			0.90298
508	90			10	0.90298
511		90	10		0.90298
514	90	10			0.90298
516			10	90	0.90298
518		10		90	0.90298
521			90	10	0.90298
546		90	10		0.90298
548			10	90	0.90298
550			10	90	0.90298
553	90	10			0.90298
554	90			10	0.90298
556			10	90	0.90298
557	90		10		0.90298
558	90	10			0.90298
560	90		10		0.90298
562		10		90	0.90298
563	10	90			0.90298
564		10		90	0.90298
566		10	90		0.90298
567	20		80		0.999996
569	10			90	0.90298
570		90		10	0.90298
701		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain