SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17561

Length: 1659 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17561

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] gb\|AAK55674.1\|AF378871_1 AT3g56130/F18O21_90 [Arabidopsis thaliana] gb\|AAK91481.1\| AT3g56130/F18O21_90 [Arabidopsis thaliana] gb\|AEE79481.1\| biotin/lipoyl attachment domain-containi	-	-	4.0e-32	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Sma3	Putative uncharacterized protein	-	-	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Biotin/lipoyl attachment	IPR000089	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NN96

Fln msg:

Fln protein: MAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLPAPPIPGEPMIDSDPTVTLPSSSPTPKDPPTRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK*

Protein Length: 301

Fln nts: ATGGGGGGAGAAGGGACAGCGGAGTTCACGAGAAAACTATCGAACAACTTCAACTACGACCACATGACATCTCCATCTAAAATACCTACGCTCGCTCCTCCCATTAAATTACTCTTTCCTTCATCGGCCTCTTATTAGTGTTCATGACTCTCAGACTTGTCTGGAGGAAGCAGAAAATCTTGGATTGAAGCAGAGCAGGAAGCGACC_-_ATGGCAGCTTCATGCCCTCACAGCCCCTTCTACTGTTCACTGGAAACATCTACACGAGCTCAGGGTTTGCTTGAGAAAGGGGTTGTGAGGTATCTGCATTATGGCTTCTCTTACAGATCCTTTCCAAGGATGAACAGTGGGGATTCATTTAGAAGCAAGTGCAGAACACTTTCCAACCCAGGGAGAACCAAAGTTTGGCTTTCAACCAATTTCAAGGCTTCTCACGCTACATTTGCTATGGCTTCTGATGGGGATGCGATAGAGAGTGGTTCCCTGGGAGAATTAGAAAAAGAAAATCAAAATGGTGCATTGTTTCCTGATGGCATTGAGTCTTTCATAACGGAGGTCTGTGACGAGACAGACATTGCTGAGATCAAACTCAAGGCTGGAAGCTTTGCAATGCACATACGCCGGAATATAGAGAAGAGCAAAAGACCATCTTCTGTGGCATCCCCATTGCCTGCTCCTCCTATCCCAGGTGAACCAATGATTGACTCTGATCCCACAGTTACTCTGCCATCTTCTTCACCAACACCAAAAGATCCTCCTACTAGGTCTTTCAACCCATTTACAGCAAAACTACCAATGTCCAAAACATCAAAGTTCGGGCTTTTGGAGGCTGCTGGTGATGAAGGCTTGTGTTTTGTAACTGCTCCAAAGGTTGGCATCTTCAAAAGGAGCCGAGTTGTGAAGGGAAGGAATGGAAGACCACTTTGTGAAGAGGGACAATCCATAAAAGAAGGGCAGGTTGTATGTTATTTGGATCAGCTTGGTGGCCAGACACCTATCATATCAGAAGTGTCAGGAGAAGTTGTCAAGATCTTATGGAGCGAAGGAGAGCCTGTTGGATATGGTGATCCTCTCATTGCTGTTCTACCTTCATTCCATGGTATCAAATGA___TTATATGTTTATAGTGGATTTTATGAGTAAAGCAGTGTACATTTACTTCACTGCCTCAGAATCAGTCTTATCTAGGGCACGCCTTGTGTTGACCAACGAACGATAGAAGAGTGTGAGGCTCCAAATTAAGAAGGAAGTTTCTCACTTGAGTTGGAATTTGGTGTTCTGTTCTCATTCATTTTTAGTTGGCATGCATTTATTTTTTGGATTCACAGTTCAGCGAATTGACCTTATAACAAGTCCTTTTTGCCTGGTTAAATTTCATTTACAGTTTTCTACATTTTGCTATTAACAAATGAGGCATTGCGATTTGAAGAAATCTGAAGAATATTGTTGAACAATCCATAATGATGTGATATTACAAAATGTAATTACTCATTTGCAATGAATATCGTATTAGTAGTAGCATTTGGGTAGTTCAGTGTCTTACCATGGAATGCTTTATTAAAGATTATGGTTATGAGGCATTGCGATTTGAAGAAATCTGAAGAATATTGTTAAACAATCCATGATGATGTGATATTACAAAATATAATTACTCATTTGCAATGG

Fln Alignment:

Contig17561___MAASCPHSPFYCSLETSTRAQGLLEKGVVRYLHYGFSYRSFPRMNSGDSFRSKCRTLSNPGRTKVWLSTNFKASHATFAMASDGDAIESGSLGELEKENQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRXXXXXXXXXXXXXXXXXMIDXXXXXXXXXXXXXXXXXXXRSFNPFTAKLPMSKTSKFGLLEAAGDEGLCFVTAPKVGIFKRSRVVKGRNGRPLCEEGQSIKEGQVVCYLDQLGGQTPIISEVSGEVVKILWSEGEPVGYGDPLIAVLPSFHGIK
A9NN96_______________MAASCPYSPFHCSLGTSTQAQGLLEKGVVRNLHYGFSYRSLPRMDSGDSFRNKRGTLSNAGRSKVWLSSNVKASHATFAMASDKDALESGSLGELEKGNQNGALFPDGIESFITEVCDETDIAEIKLKAGSFAMHIRRNIEKSKRPSSVASPLTAPPVPSEPMVDFDHTVTPPPSSPAPKAPPTRSFNPFTTKLSLSKTSKFGLLEAAGDEGLCFVTAPKVGLFKRSRVVKGRNGRPLCEEGQSIKEGQVVCFLDQLGGQTPVTSEVSGEIVKILWSDGEPVGYGDPLIAVLPSFRGIK

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
656	11		88		0.999937
1531	14		85		0.993533
1532		14		85	0.993533
1534			85	14	0.993533
1586	20			80	0.995493
1601		20		80	0.995493
1602	20	80			0.995493
1604			80	20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain