SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17541

Length: 2014 nt

UniGene Fasta

>sp_v3.0_unigene17541
ATGGGGAACTCCCATTTGACCGGAGCAACCTACCTGCAACCAACCGTACTTCCATACGTATATACGCTTAAAAGAGCAGCGTATTATGGGGACACATACGGCCACCAATCTCTTTGTGCTGGTAGGGGAGTGTGAGAAGCGTGAGAGAATTTGGGCGAATTTTGTAAATCCAAGGGCGGCGTTTGCAAAGCTGTTCGTCTCTGTCTCTCCGCTTTGACTGTTACTCTTAAGGTTTTCTCCTCGTGTTAGACTGCGCATCGTGAGCAGTTAGTTTTTGTTAAAACGGTAATCGTTTGAATCAGACTACCGGTTTTGATCGAGCCAACGCCGTTGTAAACAATCACGGATGGCTGTTGCAAATTTACAACCTGCTCGTGCTACTACTCAGGCTTACAGTGCACACATTAATCTATCCTGTTCCAATGACTTGCCTAGCACGGCATCTCTGTCATCTTTAAAGAGAAAAAGTTTAACTTACGATTTAATAGCGACTATCAGACCGGGTGCTTTGGTTACTGGAAGAAAGTATGGGAGAACTTGCTTTATATCAGCTCAGGCTTCTCCTGTTTTGGATCCAGTTTTGTCGTCCTCAAAGAATTCAAACGATCCTCCGAAGAAATCCTCTGAAGCAGCCTTGATTTTGATTCGTCATGGAGAGTCACTGTGGAACGAGAAAAATTTGTTTACAGGGTGTGTTGATGTACCATTGACACAAAGAGGGGTAGAAGAAGCTGTTGAAGCTGGAAAGAGGATTAGCAATATTCCTGTTGACGTCATATTTACTTCTGCATTGGTTCGGGCTCAGATGACTGCTATGCTTGCAATGACTCAGCACCGCAGGAAAAAGGTACCAGTGATAATACATAATGAGAGTGAGCAGGCGAAGGCATGGAGTACAATATACAGTGAAGATACTAAGAAACAGTCTATTCCAGTATTAACAGCTTGGCAACTCAATGAGCGCATGTATGGTGAATTGCAAGGACTCAATAAACAAGAGACAGCTGATAGATTTGGAAAGGAAAAGGTCCATCAATGGCGTCGTAGTTATGATATCCCTCCTCCAAATGGTGAGAGCCTTGAGATGTGTGCAGAACGAGCTGTTGCCTACTTCAAAGACCAGATTGTGCCTCAACTTCATTGTGGGAAAAACGTGCTGATTGCTGCTCATGGAAATTCTCTGCGGTCTATAATAATGTATCTGGACAAGTTATCTTCTCAGGAGGTTATAAGTCTAGAGCTATCCACCGGGATCCCCATGCTTTATATCTTCAAAGAAGGCAAATTTCTTAGAAGAGGAAGTCCTATTGGACCTTCAGAAGCTGGAGTTTATGCTGTTACGAAGAATTTGGCTCTTTACAGGCAAAAGCTGGATGATATGATACACTGATGTTGTGAACTAGTTATCTTTCATTCAGCAGTGCAGTTGTTCCCTACTCTATCAGCAAACAGGAGAACAAAACTATTTGCCTATGTAAAATCAGGCGTTCTTTTGGTGATGAATCAAGATGCTACAGAGACCTCGCTTGTTGATTTTAGCTTTACAAGCTGCTGTTCGGTTTGTCTTTGTAGCTTTGATGGGTTATCAGCATACATTTGTTAGGAAAGATAATCTGAATAAATGATGTTCCACCCAATTTCATGATCAAATTAAAGATTTAGGCCAAGTGGAGTGTATCTTATTATCATTATGATTTATAAACTGGAAAGCAGTAGCACATGGAAACTGGAGTACCTTTGAAAGTGGGTATACAGTTCTATTGTGAAGTCAAACACATTTCGTGGATGCTAGTATTAGACTTAGTATTAATGAGAAGTTCTGTCAACATACACCATATGTTAGAGTGGATATCATTTGAAGCAGGGTGTTAGGTTAGGTCAGTGTTAAAGAAATATTGTATGCTAGTCATTGTTTTGTTTCTCTGGTAGTCTATTCTGTTCAGCACTCATTTTCTTTCATCATGTACTGGCATAATATGCAATCTATAAATGAATCAACTGGTTACATGTCCTA

Ace file of the UniGene sp_v3.0_unigene17541

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphoglycerate mutase, putative n=1 Tax=Ricinus communis RepID=B9RJG7_RICCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Phosphoglycerate mutase	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	intramolecular transferase activity, phosphotransferases	GO:0016868	Molecular Function	0.0	-
Sma3	glycolysis	GO:0006096	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	Phosphoglycerate mutase 1	IPR005952	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G22170.1	Phosphoglycerate mutase family protein chr1:7826603-7828055 FORWARD LENGTH=334	83%
RefSeq	Arabidopsis thaliana	NP_564161.1	phosphoglycerate mutase-like protein [Arabidopsis thaliana]	83%
RefSeq	Populus trichocarpa	XP_002301039.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NVC7

Fln msg:

Fln protein: MAVANLQPARATTQAYSAHINLSCSNDLPSTASLSSLKRKSLTYDLIATIRPGALVTGRKYGRTCFISAQASPVLDPVLSSSKNSNDPPKKSSEAALILIRHGESLWNEKNLFTGCVDVPLTQRGVEEAVEAGKRISNIPVDVIFTSALVRAQMTAMLAMTQHRRKKVPVIIHNESEQAKAWSTIYSEDTKKQSIPVLTAWQLNERMYGELQGLNKQETADRFGKEKVHQWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLHCGKNVLIAAHGNSLRSIIMYLDKLSSQEVISLELSTGIPMLYIFKEGKFLRRGSPIGPSEAGVYAVTKNLALYRQKLDDMIH*

Protein Length: 349

Fln nts: ATGGGGAACTCCCATTTGACCGGAGCAACCTACCTGCAACCAACCGTACTTCCATACGTATATACGCTTAAAAGAGCAGCGTATTATGGGGACACATACGGCCACCAATCTCTTTGTGCTGGTAGGGGAGTGTGAGAAGCGTGAGAGAATTTGGGCGAATTTTGTAAATCCAAGGGCGGCGTTTGCAAAGCTGTTCGTCTCTGTCTCTCCGCTTTGACTGTTACTCTTAAGGTTTTCTCCTCGTGTTAGACTGCGCATCGTGAGCAGTTAGTTTTTGTTAAAACGGTAATCGTTTGAATCAGACTACCGGTTTTGATCGAGCCAACGCCGTTGTAAACAATCACGG_-_ATGGCTGTTGCAAATTTACAACCTGCTCGTGCTACTACTCAGGCTTACAGTGCACACATTAATCTATCCTGTTCCAATGACTTGCCTAGCACGGCATCTCTGTCATCTTTAAAGAGAAAAAGTTTAACTTACGATTTAATAGCGACTATCAGACCGGGTGCTTTGGTTACTGGAAGAAAGTATGGGAGAACTTGCTTTATATCAGCTCAGGCTTCTCCTGTTTTGGATCCAGTTTTGTCGTCCTCAAAGAATTCAAACGATCCTCCGAAGAAATCCTCTGAAGCAGCCTTGATTTTGATTCGTCATGGAGAGTCACTGTGGAACGAGAAAAATTTGTTTACAGGGTGTGTTGATGTACCATTGACACAAAGAGGGGTAGAAGAAGCTGTTGAAGCTGGAAAGAGGATTAGCAATATTCCTGTTGACGTCATATTTACTTCTGCATTGGTTCGGGCTCAGATGACTGCTATGCTTGCAATGACTCAGCACCGCAGGAAAAAGGTACCAGTGATAATACATAATGAGAGTGAGCAGGCGAAGGCATGGAGTACAATATACAGTGAAGATACTAAGAAACAGTCTATTCCAGTATTAACAGCTTGGCAACTCAATGAGCGCATGTATGGTGAATTGCAAGGACTCAATAAACAAGAGACAGCTGATAGATTTGGAAAGGAAAAGGTCCATCAATGGCGTCGTAGTTATGATATCCCTCCTCCAAATGGTGAGAGCCTTGAGATGTGTGCAGAACGAGCTGTTGCCTACTTCAAAGACCAGATTGTGCCTCAACTTCATTGTGGGAAAAACGTGCTGATTGCTGCTCATGGAAATTCTCTGCGGTCTATAATAATGTATCTGGACAAGTTATCTTCTCAGGAGGTTATAAGTCTAGAGCTATCCACCGGGATCCCCATGCTTTATATCTTCAAAGAAGGCAAATTTCTTAGAAGAGGAAGTCCTATTGGACCTTCAGAAGCTGGAGTTTATGCTGTTACGAAGAATTTGGCTCTTTACAGGCAAAAGCTGGATGATATGATACACTGA___TGTTGTGAACTAGTTATCTTTCATTCAGCAGTGCAGTTGTTCCCTACTCTATCAGCAAACAGGAGAACAAAACTATTTGCCTATGTAAAATCAGGCGTTCTTTTGGTGATGAATCAAGATGCTACAGAGACCTCGCTTGTTGATTTTAGCTTTACAAGCTGCTGTTCGGTTTGTCTTTGTAGCTTTGATGGGTTATCAGCATACATTTGTTAGGAAAGATAATCTGAATAAATGATGTTCCACCCAATTTCATGATCAAATTAAAGATTTAGGCCAAGTGGAGTGTATCTTATTATCATTATGATTTATAAACTGGAAAGCAGTAGCACATGGAAACTGGAGTACCTTTGAAAGTGGGTATACAGTTCTATTGTGAAGTCAAACACATTTCGTGGATGCTAGTATTAGACTTAGTATTAATGAGAAGTTCTGTCAACATACACCATATGTTAGAGTGGATATCATTTGAAGCAGGGTGTTAGGTTAGGTCAGTGTTAAAGAAATATTGTATGCTAGTCATTGTTTTGTTTCTCTGGTAGTCTATTCTGTTCAGCACTCATTTTCTTTCATCATGTACTGGCATAATATGCAATCTATAAATGAATCAACTGGTTACATGTCCTA

Fln Alignment:

Contig17541___RMAVANLQPARATTQAYSAHINLSCSNDLPSTASLSSLKRKSLTYDLIATIRPGALVTGRKYGRTCFISAQASPVLDPVLXXXXXXXXXXXXXXEAALILIRHGESLWNEKNLFTGCVDVPLTQRGVEEAVEAGKRISNIPVDVIFTSALVRAQMTAMLAMTQHRRKKVPVIIHNESEQAKAWSTIYSEDTKKQSIPVLTAWQLNERMYGELQGLNKQETADRFGKEKVHQWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLHCGKNVLIAAHGNSLRSIIMYLDKLSSQEVISLELSTGIPMLYIFKEGKFLRRGSPIGPSEAGVYAVTKNLALYRQKLDDMIH
A9NVC7_______________RMAAATLQPARATTQAYNAHINISCFNDLPSTGSLPSLKRKSLTYDLIAIIKPVALVTGRKNGRTCSISAQASPVLDPVLSSSKNSNDPPKKSSEAALILIRHGESLWNEKNLFTGCVDVPLTQRGVEEAVEAGKRISNIPVDAIFTSALVRAQMTAMLAMTQHRRKKVPVIIHNESEQAKGWSTIYSEDTKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEKVHQWRRSYDIPPPNGESLEMCAERAVAYFKEQIVPQLDCGKNVMIAAHGNSLRSIIMYLDKLSSQEVISLELSTGIPMLYIFKEGKFMRRGSPIGPSEAGVYAVTKNLALYRQKLDDMIH

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
1630	4			95	0.995482
1631		4	95		0.995881
1682		6		93	0.999264
1948		66	33		1.0
2015		44		55	1.0
2017		33	33	33	0.997753

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain