SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17540

Length: 1594 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17540

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable cinnamyl alcohol dehydrogenase 2 n=11 Tax=Pinaceae RepID=CADH2_PICAB	-	-	0.0	90%
FL-Next	tr=Cinnamyl alcohol dehydrogenase; Pinus pinaster (Maritime pine).	-	-	0.0	100%

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Phenylpropanoid biosynthesis	00940	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	CAD;

Source	GOs	Term	Type	Identity
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G34230.1	CAD5, ATCAD5, CAD-5 cinnamyl alcohol dehydrogenase 5 chr4:16386898-16388666 REVERSE LENGTH=357	66%
RefSeq	Arabidopsis thaliana	NP_195149.1	cinnamyl alcohol dehydrogenase 5 [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002313875.1	cinnamyl alcohol dehydrogenase [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: F4MKL5

Fln msg:

Fln protein: MGSLESEKTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLEFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVAGSKLDN*

Protein Length: 359

Fln nts: ATGGGGAGACTTTGCCAATATCCTTATAAATACCTGCCAATCTCCTTATATGGGGGATTCTCCGGCAAAACGTCCATAGCTTCCTTGCCATCTGCAAGCAATACAGTACAAGAGCCAGACGATCGAATCCTGTGAAGTGGTTCTGAAGAG_-_ATGGGAAGCTTGGAATCTGAAAAAACTGTTACAGGATATGCAGCTCGGGACTCCAGTGGCCACTTGTCCCCTTACACTTACAATCTCAGAAAGAAAGGACCTGAGGATGTAATTGTAAAGGTCATTTACTGCGGAATCTGCCACTCTGATTTAGTTCAAATGCGTAATGAAATGGGCATGTCTCATTACCCAATGGTCCCTGGGCATGAAGTGGTGGGGATTGTAACAGAGATTGGTAGCGAGGTGAAGAAATTCAAAGTGGGAGAGCATGTAGGGGTTGGTTGCATTGTTGGGTCCTGTCGCAGTTGCGGTAACTGCAATCAGAGCATGGAACAATACTGCAGCAAGAGGATTTGGACCTACAATGATGTGAACCATGACGGCACCCCTACTCAGGGAGGATTTGCAAGCAGTATGGTGGTTGATCAGATGTTTGTGGTTCGAATCCCGGAGAATCTTCCTCTGGAACAAGCAGCCCCTCTGTTATGTGCAGGGGTTACAGTTTTCAGCCCAATGAAGCATTTCGGCATGACAGAGCCGGGGAAGAAATGTGGGATTTTGGGTTTAGGAGGCGTGGGGCACATGGGTGTCAAGATTGCCAAAGCCTTTGGACTTCACGTGACGGTTATCAGTTCGTCTGATAAAAAGAAAGAAGAAGCCATGGAAGTCCTCGGCGCCGATGCTTATCTTGTTAGCAAGGATACTGAAAAGATGATGGAAGCAGCAGAGAGCCTAGATTACATAATGGACACCATTCCAGTTGCTCATCCTCTGGAACCATATCTTGCCCTTCTGAAGACAAATGGAAAGCTAGTGATGCTGGGCGTTGTTCCAGAGCCGTTGCACTTCGTGACTCCTCTCTTAATACTTGGGAGAAGGAGCATAGCTGGAAGTTTCATTGGCAGCATGGAGGAAACACAGGAAACTCTAGAATTCTGTGCAGAGAAGAAGGTTTCATCGATGATTGAGGTTGTGGGCCTGGACTACATCAACACGGCCATGGAAAGGTTGGTGAAGAACGATGTCCGTTACAGATTTGTGGTGGATGTTGCTGGAAGCAAGCTGGATAACTAG___TCTGCAATCAATCAATCAGATCAATGCCTGCATGCAAGAATGAATAGATCTGGACTAGTAGCTTAACATGAAAGGGAAATTACATTTTATTTAGGAACTGGATACTGGGTTTTGTTATTTTAGTTTAGCTTTTGTGAGGCTGAAACAATTCAGATGTTTTTTTAACTTGTATATGTAAAGATCATTTCTCGTGACAGTAAATAATAATCCAATGGCGAGTCTTCCGCCAAATTAATATAGTATTCGTATTTTACTATGAACCATGAGTTTATTAAATTTGTCAATGGAAATGGCAAATTATTTAGATGTAATTATTATAAGTTTTGGAATTTATTTTGGAATTCAAGGAAATTATTTTAATAAAATGTAA

Fln Alignment:

Contig17540___KTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFGMTEPXXXXXXXXXXXXXXXXXXXAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLEFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVAGSKLDN
F4MKL5_______________KTVTGYAARDSSGHLSPYTYNLRKKGPEDVIVKVIYCGICHSDLVQMRNEMGMSHYPMVPGHEVVGIVTEIGSEVKKFKVGEHVGVGCIVGSCRSCGNCNQSMEQYCSKRIWTYNDVNHDGTPTQGGFASSMVVDQMFVVRIPENLPLEQAAPLLCAGVTVFSPMKHFGMTEPGKKCGILGLGGVGHMGVKIAKAFGLHVTVISSSDKKKEEAMEVLGADAYLVSKDTEKMMEAAESLDYIMDTIPVAHPLEPYLALLKTNGKLVMLGVVPEPLHFVTPLLILGRRSIAGSFIGSMEETQETLEFCAEKKVSSMIEVVGLDYINTAMERLVKNDVRYRFVVDVAGSKLDN

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
941		85		14	0.993533
1293	97		2		0.933298
1435		69		30	1.0
1466		6		93	0.99903
1482	10			90	0.90298
1483	10		90		0.90298
1486		83		16	0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
1229	1242	CAAT CAAT CAAT CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain