SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17510

Length: 1688 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17510

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exo-beta-glucanase n=1 Tax=Lilium longiflorum RepID=Q6UY81_LILLO	-	-	0.0	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Sma3	Beta-D-glucan exohydrolase-like protein	-	-	6.769e-21	-

Source	ECs	Term	Type	e value	Identity
Sma3	Beta-glucosidase.	EC:3.2.1.21	-	1.142e-14	-

Source	KEGGs	Term	e value	Identity
Sma3	Cyanoamino acid metabolism	00460	1.142e-14	%
Sma3	Starch and sucrose metabolism	00500	1.142e-14	%
Sma3	Phenylpropanoid biosynthesis	00940	1.142e-14	%
Sma3	Biosynthesis of secondary metabolites	01110	1.142e-14	%

Source	Gene names
Sma3	At3g47000; At3g47000/F13I12.50; At3g47010; At3g47040; At3g47050; At3g62710; At3g62710/F26K9_140; At5g04885; At5g20940; At5g20950; B1122D01.6; ExoI; F13I12.100; F13I12.50; F13I12.60; F13I12.90; F26K9_140; GSVIVT00002637001; GSVIVT00017475001; GSVIVT0001747

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	anchored to membrane	GO:0031225	Cellular Component	-
Sma3	glucan exo-1,3-beta-glucosidase activity	GO:0004338	Molecular Function	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	beta-glucosidase activity	GO:0008422	Molecular Function	-
Sma3	xylan 1,4-beta-xylosidase activity	GO:0009044	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Double-stranded RNA-binding	IPR001159	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Glycoside hydrolase, family 3, N-terminal	IPR001764	-	-
Sma3	Glycoside hydrolase family 3 C-terminal domain	IPR002772	-	-
Sma3	Double-stranded RNA-binding-like	IPR014720	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G20950.1	Glycosyl hydrolase family protein chr5:7107609-7110775 REVERSE LENGTH=624	69%
RefSeq	Arabidopsis thaliana	NP_197595.2	Glycosyl hydrolase family protein [Arabidopsis thaliana]	69%
RefSeq	Populus trichocarpa	XP_002319151.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUD1

Fln msg: your sequence is shorter than subject: 529 - 631

Fln protein: LQKGAMSTRLQIPMIYGIDALHGHNNAYGATIFPHNIGLGATRDPDLARRIGAATALEIRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPNIVKAMTQIILGLQGQPPAKYKRGIPFIAGKSNVAACAKHFVGDGGTTSGINGNNTVISYKGLLKIHMAPYFDAIAKGVSTIMISYSSWNGVKMHANHFLISQVLKKQLGFKGFVISDWGGIDQITSPPDANYSLSVFDGVGAGIDMVMVPYDFTDFIGNLTSQVKSGLISMARVNDAVRRILRVKFTMGLFEHPMANPSLANQLGSKAHRELAREAVRKSLVLLKNGKSDSKPLVPLDKNAPKILVAGTHPDNLGYQCGGWTITWQGSSGNITKGTTILEAIKSAVSPSTKIVYQENPDAKHVKRQGFAYAIVVVGEAPYAETGGDNLNLTIPLGGGDAIKNVCGSVKCLVILISGRPLVIEPYLSLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVGQLPMNVGDKHYDPLFPFGFGLTTTVAQNR*

Protein Length: 530

Fln nts: GCTCCAGAAGGGTGCCATGTCTACTCGTCTTCAGATCCCTATGATTTATGGTATTGATGCTCTGCATGGCCACAACAATGCCTATGGGGCTACCATCTTCCCTCACAATATTGGGCTTGGAGCTACCAGAGATCCTGATTTGGCTAGAAGAATTGGTGCTGCAACAGCTCTGGAAATTAGAGCTACTGGCATTCAATACACATTTGCTCCATGTGTTGCTGTTTGCAGAGATCCCCGATGGGGGCGCTGCTATGAGAGCTACAGCGAGGATCCAAATATTGTCAAGGCAATGACACAGATTATCTTAGGTCTGCAGGGGCAGCCTCCTGCCAAATATAAAAGGGGGATTCCTTTTATTGCTGGAAAGTCAAATGTTGCAGCTTGTGCTAAGCACTTTGTGGGTGATGGCGGAACAACCAGTGGTATCAATGGGAACAACACTGTTATCAGTTATAAAGGATTACTAAAAATCCATATGGCCCCCTATTTTGATGCCATTGCCAAAGGAGTCTCCACAATTATGATTTCCTATTCCAGTTGGAATGGAGTGAAGATGCACGCTAACCATTTTCTCATTTCTCAAGTTCTAAAGAAGCAACTTGGCTTCAAGGGCTTTGTTATTTCAGATTGGGGAGGTATCGACCAAATAACTAGCCCACCTGATGCTAATTACTCTTTGTCAGTCTTTGATGGTGTCGGTGCAGGGATTGACATGGTGATGGTTCCTTACGATTTCACAGACTTTATTGGCAATCTGACTTCGCAAGTCAAGAGTGGTTTGATCTCAATGGCAAGAGTAAATGATGCAGTTCGAAGAATTCTGAGAGTAAAATTCACCATGGGACTCTTTGAACATCCTATGGCCAATCCGAGCCTAGCCAACCAACTTGGCAGCAAGGCGCACAGGGAGTTAGCAAGAGAAGCTGTTAGGAAATCTCTGGTCTTGTTGAAAAATGGAAAGTCAGACAGCAAGCCTTTGGTTCCTTTGGATAAGAATGCTCCTAAGATTCTTGTTGCAGGGACTCATCCTGACAACTTGGGTTATCAGTGTGGCGGATGGACAATAACTTGGCAAGGATCAAGTGGAAACATAACCAAAGGAACTACAATTCTTGAAGCAATCAAATCTGCCGTTAGCCCTTCTACAAAGATCGTTTATCAGGAAAATCCAGATGCAAAACATGTCAAACGACAAGGGTTTGCATATGCCATTGTGGTCGTGGGTGAAGCACCTTATGCAGAAACGGGTGGGGATAATCTTAATTTGACCATTCCCTTGGGCGGAGGTGATGCGATTAAGAATGTATGTGGCTCTGTGAAATGCCTTGTAATCTTGATATCTGGAAGGCCACTTGTTATTGAACCTTATCTTTCATTGGTTGATGCTTTTGTTGCGGCGTGGCTTCCGGGTACTGAAGGCCAAGGTGTGACAGATGTGATTTTCGGAGATTATGGCTTCCAGGGGAAACTTCCAAGGACATGGTTCAAGAGTGTTGGTCAACTGCCTATGAATGTGGGGGACAAGCACTATGATCCCCTCTTTCCCTTCGGTTTTGGATTGACCACAACAGTGGCTCAAAATCGGTAG___TTATTTAGTCATGCCCGTCTCTTATTCATTTAATAATGATTGCACTGTGTAACAAATTTTATCTACCAACAATAATTGAAAAAGTATTTTGACACTTTTT

Fln Alignment:

Contig17510___LQKGAMSTRLQIPMIYGIDALHGHNNAYGATIFPHNIGLGATRDPDLARRIGAATALEIRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPNIVKAMTQIILGLQGQPPAKYKRGIPFIAGKSNVAACAKHFVXXXXXXXXXXXXXXVISYKGLLKIHMAPYFDAIAKGVSTIMISYSSWNGVKMHANHFLISQVLKKQLGFKGFVISDWGGIDQITSPPDANYSLSVFDGVGAGIDMVMVPYDFTDFIGNLTSQVKSGLISMARVNDAVRRILRVKFTMGLFEHPMANPSLANQLGSKAHRELAREAVRKSLVLLKNGKSDSKPLVPLDKNAPKILVAGTHPDNLGYQCGGWTITWQGSSGNITKGTTILEAIKSAVSPSTKIVYQENPDAKHVKRQGFAYAIVVVGEAPYAETGGDNLNLTIPLGGGDAIKNVCGSVKCLVILISGRPLVIEPYLSLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVGQLPMNVGDKHYDPLFPFGFGLTTTVAQN
A9NUD1_______________LQKGAMSTRLQIPMMYGIDAVHGHNNAYGATMFPHNIGLGATRDPDLARRIGAATALEVRATGIQYTFAPCVAVCRDPRWGRCYESYSEDPKIVKAMTQIIFGLQGQPPANSTKGVPFIAGQSNVAACAKHFVGDGGTTNGIDENNTVIDYKGLVNIHMTPYFDAIAKGVSTIMVSYSSWNGMKMHANRFLVSEVLKKQLGFKGFVISDWQGIDRITSPPGANYSLSVFDGVGAGIDMVMVPENFTNFITELTSQVKGGLISMTRINDAVRRILTVKFTMGLFEYPMADPSLANHFGSKEHRELAREAVRKSLVLLKNGKSAGKPLLPLDKNAPKILVAGTHPNNLGYQCGGWTIEWQGLSGNSTIGTTILQAIKFAVSPSTEVIYQQNPDANYVKGQGFSYAIVVVGEAPYAEMNGDNLNLTIPLGGGDTIKNVCSSLKCLVILISGRPLVIEPYLPLVDAFVAAWLPGTEGQGVTDVIFGDYGFQGKLPRTWFKSVDQLPMNVGDKHYDPSFPLGFGLTTTVDEN

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
1057	25	75			0.996473
1460		72		27	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain