SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17503

Length: 1254 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17503

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S8 n=4 Tax=Picea sitchensis RepID=A9NNT7_PICSI	-	-	73%
FL-Next	sp=40S ribosomal protein S8; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Ribosomal protein S8	-	-	-

Source	GOs	Term	Type	Identity
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein S8e	IPR001047	-	0.0	-
Sma3	Ribosomal protein S8e, conserved site	IPR018283	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G59240.1	Ribosomal protein S8e family protein chr5:23902626-23903670 REVERSE LENGTH=210	77%
RefSeq	Arabidopsis thaliana	NP_200732.2	40S ribosomal protein S8-2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002329256.1	predicted protein [Populus trichocarpa]	81%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNT7

Fln msg:

Fln protein: MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYAQDIGRKKKAAAAAKKETTEEGEAAVEEEKKKSKHLLRKIEHRQEGHKLDPHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYNKKIQRKKGKGAGAA*

Protein Length: 224

Fln nts: TGGTATACTGGGTTTATGTTCTTTCGTTCCTCCTCTTCCCTCTCGGTTTTAGGTATAGGGTTGCGGCGGTGCGGTCCGATCTGCAGGGTTTCTGGTCGATTCTGAAACC_-_ATGGGTATCTCACGGGATTCACTTCACAAGAAACGTGCGACTGGAGGGAAGAAGAAGGTCTGGAGGAAAAAGCGAAAGTATGAGTTGGGCAGACAGCCTTCAATGACGAAACTGTCTAGTAACAAGACCGTGAGAAGGGTGCGTGTGAGAGGAGGTAATGTAAAGTGGAGGGCTTTGAGACTCGATACTGGTAACTTTTCTTGGGGTTCTGAGGCTGTGACTCGCAAGACTCGTATATTAGACGTGGTTTACAATGCATCTAATAATGAGCTTGTCAGAACCCAGACTTTGGTAAAGAGTGCCATTATTCAGGTTGATGCTGCTCCTTTCCGTCAGTGGTATGAACAGCACTACGCTCAGGATATTGGCAGGAAGAAGAAGGCTGCTGCTGCTGCCAAGAAAGAGACTACCGAGGAGGGAGAAGCTGCAGTCGAGGAGGAGAAGAAAAAAAGCAAACATCTTTTGAGGAAGATTGAGCATCGACAAGAAGGTCACAAACTTGACCCACATCTGGAAGAGCAGTTTGCTAGTGGTCGTCTTTTGGCTGCAATTGCTTCACGTCCAGGCCAATGTGGACGTGCTGATGGGTATATTCTTGAGGGTCGGGAGCTTGAGTTTTACAATAAAAAGATTCAGAGAAAGAAGGGCAAGGGAGCCGGTGCTGCTTAA___AAGCAAGCAAATTTTGCTTCTTGAGATTCTTAGCATCTTTGTTCACAATGTTTAGTGTTGGCCCTGGGTAACATCAAAAGAGCTTTATGGTTAGGTTTGAGGATAATTTTTTGTGGTAACTGGTCACGCTTCTATTTGCATTTGTTAGTTCTTTCAACTGAGTGGAGTATAATAATTAAAAATTTGTTAGATGGCTGGATTTTTTAAATTTATTTTCTATTTTAAATGGAATGTCACACTGAAGAACCATTTTGTATTAAGCTTCAAAGTATCTGTAGCAAGTTAATATTTTCTTCCGAGATTTGTAGGGAGTGCATTTAAGACCTTTTTTTTGAAACAGAGGCATGCATTTTTAGTTATACCAAAGCAAGTTTACATTTATATCTGATTGTTTCACAAATGAACTGTTCTTATCTAGCTGTGATTCTGTTTGATACGAAAGGGCCCTTTTTGCAATATGAAGTTTGGAATAAGAT

Fln Alignment:

Contig17503___MGISRDSLHKKRATGGXXXXXXXXXXYELGRQPSMTKLSSNKTXXXXXXXXXXXKWRALRLDTGNFSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYAQDIGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLLRKIEHRQEGHKLDPHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYNKKIQR
A9NNT7_______________MGISRDSLHKKRATGGKKKVWRKKRKYELGRQPSMTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIIQVDAAPFRQWYEQHYGLDIGRKKKAAAAAKKETTEEGEATAEEEKKKSKHLLKKIEKRQEGHKLDSHLEEQFASGRLLAAIASRPGQCGRADGYILEGRELEFYLKKIQR

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
430		91		8	0.999766
560	85		14		0.993533
561	14		85		0.993533
631			83	16	0.994512
632			16	83	0.994512
633			16	83	0.994512
634			16	83	0.994512
697	20		80		0.995493
906	48		51		1.0
984	36			63	1.0
999	39			60	1.0
1003	91		8		0.999807
1143	72		9	18	0.999994

SSRs (tot: 1)

Start position	End position	Sequence	Length
491	504	GCT GCT GCT GCT GC	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain