SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17473

Length: 1414 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17473

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proteasome subunit alpha type n=1 Tax=Picea sitchensis RepID=A9NPU7_PICSI	-	-	0.0	97%
FL-Next	sp=Proteasome subunit alpha type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%

Source	ECs	Term	Type	e value	Identity
Sma3	Proteasome endopeptidase complex.	EC:3.4.25.1	-	0.0	-

Source	GOs	Term	Type	Identity
Sma3	proteasome core complex	GO:0005839	Cellular Component	-
Sma3	threonine-type endopeptidase activity	GO:0004298	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	0.0	-
Sma3	Proteasome, alpha-subunit, N-terminal domain	IPR000426	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G27020.1	PAG1 20S proteasome alpha subunit G1 chr2:11528515-11530858 REVERSE LENGTH=249	87%
RefSeq	Arabidopsis thaliana	NP_180270.1	proteasome subunit alpha type-3 [Arabidopsis thaliana]	87%
RefSeq	Populus trichocarpa	XP_002299648.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPU7

Fln msg:

Fln protein: MGSIGTGYDLSVTTFSPDGRVFQIEYATKAVDNSGTVIGIKCKDGIVLGVEKLIASKMLLEGSNRRIHAVHNHAGMGVAGLAADGRQIVARAKSEATSYENTYGEPIPIKELCERVASYVHLCTLYWWLRPFGSGVILGGYDRDGPQLYMIEPSGVAYRYFGTAIGKGRQAAKTEIEKLKLSEMTCREGVIEVAKIIYGVHDEAKDKAFELEMSWICDESKRRHQKVPADLLEEAKEAAKAAQEDMDAD*

Protein Length: 251

Fln nts: ATGGGGAGTGTGTCATGGACGCTACTGGTCTTCTTCGCTTTTGCTCTTTCCCTGTTGTTGGTGGGTGTTATGAAAGCTTGGTGAACAAGTAAGTCGTGAAATCTCAGAGTATCTCGTCTGAATCTCGGAGCCGAAGCCTAGGAGCTCGACATCACTAAGAACTATTTTTGCCTTCACGTGCTGAGCAGATCGCAGGACCAAT_-_ATGGGTAGCATTGGAACCGGGTATGATTTGTCAGTTACAACATTCTCCCCAGATGGACGAGTCTTTCAAATAGAGTATGCAACAAAAGCTGTCGATAATAGCGGAACTGTGATTGGCATAAAGTGCAAAGATGGGATTGTTTTGGGGGTGGAGAAGCTCATTGCTTCTAAAATGCTTCTAGAAGGATCCAATCGAAGAATTCATGCTGTTCACAATCATGCTGGCATGGGTGTGGCTGGATTGGCAGCAGATGGTAGGCAAATTGTGGCTCGTGCTAAATCAGAAGCAACGAGTTATGAAAACACTTATGGTGAGCCGATCCCTATTAAGGAACTTTGTGAACGTGTTGCCAGTTATGTGCATTTGTGCACACTATATTGGTGGTTAAGGCCTTTTGGATCTGGAGTTATCCTTGGAGGTTATGATAGAGATGGGCCCCAACTATATATGATTGAGCCATCAGGAGTAGCCTATCGATACTTTGGGACAGCTATTGGCAAAGGCAGGCAGGCTGCAAAAACTGAAATTGAGAAGTTGAAGCTCTCTGAAATGACTTGCAGAGAAGGAGTAATAGAAGTTGCAAAAATCATATATGGAGTACATGATGAAGCGAAGGATAAAGCATTTGAGTTGGAAATGAGCTGGATTTGTGATGAATCAAAAAGGCGACATCAAAAGGTTCCAGCAGATCTTTTAGAAGAAGCCAAGGAAGCAGCAAAGGCAGCACAAGAAGACATGGATGCAGACTAA___ACCAGAAAAGCTTTTTCCCATTTTCTTCGTTGAGTAAAGTACCATGTAGTCCAAAGCATTAACACATGGAATGAAAACATCTCAAAATGATAATCTTTTTCAGACGCTGCATTGTACCCCAAAATGAATAGGAACATTTTTCTTTTGGGGCAAAAATTATTTATTTTCCTAGAATTATTCCCAACGTGAGGAAGTAATTTTTATTTGGCTTTTCATTCTATATTCCGTTGAAACATCACATTATGCATTCTCTTTTCTTTTCCGAGATATTAAACCAAGGATTTGAATATTGTGACTGAAAGGTGCCTACCCCATAATTTGGCAATTTAGGCAAGAGATATTTGCGTTCTAAACTAGAAGCAAGGTTAACTACTCTTTTCGAAAGGCCAATTATTTACCAAGCCTGGTGTCTTCTGACAGTATTTTTTTAACCAAGACATGATACCTAAGCGGATTTATTTT

Fln Alignment:

Contig17473___MGSIGTGYDLSVTTFSPDGRVFQIEYATKAVDNSGTVIGIKCKDGIVLGVEKLIASKMLLEGSNRRIHAVHNHAGMGVAGLAADGRQIVARAKSEATSYENTYGEPIPIKELCERVASYVHLCTLYWWLRPFGSGVILGGYDRDGPQLYMIEPSGVAYRYFGTAIGKGRQAAKTEIEKLKLSEMTCREGVIEVAKIIYGVHDEAKDKAFELEMSWICDESKRRHQKVP
A9NPU7_______________MGSIGTGYDLSVTTFSPDGRVFQIEYATKAVDNSGTVIGIKCKDGIVLGVEKLIASKMLLEGSNRRIHAVHNHAGMAVAGLAADGRQIVARAKSEATSYENTYGEPIPIKELCERVASYVHLCTLYWWLRPFGSGVILGGYDRDGPQLYMVEPSGVAYRYFGTAIGKGRQAAKTEIEKLKLSEMTCREGVVEVAKIIYGVHDEAKDKAFELEMSWICDESKKQHQKVP

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
699	9		90		0.999872
702	90			9	0.999872
703	90			9	0.999872
715		11		88	0.999952
1012			3	96	0.986325
1013	96		3		0.986325
1119	28			71	1.0
1185	90		10		0.90298
1291		25		75	0.996473
1404		20	60	20	0.99255

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain