SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17468

Length: 1394 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17468

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RecName: Full=Acid phosphatase 1; AltName: Full=Apase-1(1); Flags: Precursor gb\|AAA34134.1\| acid phosphatase type 1 precursor [Solanum lycopersicum] gb\|AAA34135.1\| acid phosphatase type 5 [Solanum lycopersicum] emb\|CAA39370.1\| acid phosphatase [Solanum ly	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Putative acid phosphatase	-	-	1.234e-25	-

Source	ECs	Term	Type	e value	Identity
Sma3	Acid phosphatase.	EC:3.1.3.2	-	2.043e-12	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Aminobenzoate degradation	00627		2.043e-12	%
Sma3	Riboflavin metabolism	00740		2.043e-12	%

Source	Gene names
Sma3	57h21.11; ACP; APS-1; APS-1(1); APS-AA2; APS1; AT4g25150; At1g04040; At2g38600; At4g25150; At4g29260; At4g29270; At5g44020; At5g44020/MRH10.13; At5g51260; B1007D10.12; B1007D10.16; B1140B01.1; B1140B01.13; F13M23.290; F21M11.2; GSVIVT00016639001; GSVIVT00

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	acid phosphatase activity	GO:0003993	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L10e	IPR001197	-	-
Sma3	Acid phosphatase (Class B)	IPR005519	-	-
Sma3	Acid phosphatase, plant	IPR010028	-	-
Sma3	Vegetative storage protein/acid phosphatase	IPR014403	-	-
Sma3	Ribosomal protein L10e/L16	IPR016180	-	-
Sma3	Ribosomal protein L10e, conserved site	IPR018255	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51260.1	HAD superfamily, subfamily IIIB acid phosphatase chr5:20832222-20833466 REVERSE LENGTH=257	46%
RefSeq	Arabidopsis thaliana	NP_199939.1	HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002328826.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NPL9

Fln msg:

Fln protein: MASLPLIHHQHHVILMCALQPNTTGTQVFNDSPSLLGYRYPNNIPSPTTKNYGEVISEKSTGHEETWEVKQENQLNFEAWRFGIETNALRSWTVVPAECVEYVKSYMVGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDVDETLISNLPYFAAHQFGGEVIDDYDFNTRWTDLAEAPTLPASHRLYAHLLELGFKIFLITGRHHYQRNGTERNLVRAGYHSWEALFFREPEDYENSAVVYKSDKRLKIEQDGFRIRGNSGDQWSDLTGCSVGDRTFKLPNPMYYVD*

Protein Length: 294

Fln nts: AGGAGTAATTCTGGTGCTGTCATGGGGGAGCAGGATCGTCCTCCAACACACATTGCCAGGATCTGATCCTCATCTTCC_-_ATGGCTTCTCTTCCGCTCATCCACCACCAGCACCATGTGATCCTCATGTGCGCTCTGCAACCCAACACCACTGGCACCCAGGTCTTCAATGACTCGCCCTCGCTCTTGGGCTACCGATATCCTAATAATATCCCCTCCCCCACAACCAAGAATTATGGCGAGGTAATTTCAGAGAAATCCACAGGCCATGAGGAGACGTGGGAGGTGAAGCAAGAGAACCAACTTAACTTTGAAGCCTGGAGGTTCGGCATAGAAACAAACGCTCTGCGCTCCTGGACAGTAGTGCCTGCAGAATGCGTGGAGTACGTGAAAAGCTACATGGTCGGAAGTGGAAGCCAATATTTGAGGGACTTAGACATGGTAGCCAACGAATCCATAGCTTATGTTAACTCTCTGAAACTCTCAGGCGATGGAAAGGACGCCTGGGTCTTCGACGTGGATGAGACCCTCATCTCAAATCTGCCCTATTTCGCAGCCCACCAGTTCGGCGGAGAGGTGATTGACGATTATGATTTTAATACGAGATGGACGGATCTGGCAGAGGCTCCGACATTGCCTGCGAGTCATAGATTATACGCCCATCTTCTTGAACTGGGTTTCAAGATCTTCTTAATAACGGGGAGGCACCACTACCAGAGGAATGGCACAGAAAGGAATCTGGTCCGAGCTGGTTATCATTCATGGGAGGCGCTTTTCTTCAGGGAACCGGAAGATTATGAGAATAGCGCTGTAGTTTATAAGTCTGACAAGAGATTGAAGATTGAGCAAGATGGGTTCAGGATCCGAGGGAACTCTGGTGATCAGTGGAGCGATTTGACTGGATGCTCTGTTGGGGACAGGACATTCAAGCTGCCCAATCCCATGTATTACGTGGACTGA___TCTTGATGTTTTGTTTTGAGGCGTTGAGAGTTGTGTTCGCTGTGATTTCTTTTTGGTTTTTTCGCCACTTATCTCTCCCTTACCACGTGCATTGCATGCAAGCCATGTGCTTGTGTGTGCCATTATCATACACTCTAGACTCGCCGCATACATTGGCCTTTGTAAAATGGGTGACGCAGGCGTCATAGCCAAACCTGAGACAGCCGATCAATGCTCTGAGGCGGGGAGGTGATGGACTCATTCTCTATGTCAGCGAAGAACCCCCTTTCTGAGACAATGATCTTTTTGAATTATTTCTGAAATAAATGTAATCATGTTGGAACTATGCTCTGAGGCGGGGAGGTGAGGGACTCATTCTCTATGTCCGCGAAGAACCCCCTTTCTGAGACGATGATCTTTTTGAATTATTTCTGAAATAAATGTAATCATGTTGGAAG

Fln Alignment:

Contig17468___MASLPLIHHQHHVILMCALQPNTTGT-QVFNDSPS--------LLGYRYPNNIPSPTTKNYGEVISEKSTGHEETWEVKQENQLNFEAWRFGIETNALRSWTVVPAECVEYVKSYMVGSGSQYLRDLDMVANESIAYVNSLKLSGDGKDAWVFDVDETLISNLPYFAAHQFGGEVIDDYDFNTRWTDLAEAPTLPASHRLYAHLLELGFKIFLITGRHHYQRNGTERNLVRAGYHSWEALFFREPEDYENSAVVYKSDKRLKIEQDGFRIRGNSGDQWSDLTGCSVGDRTFKLPNPMYYV
A9NPL9_______________MASLPLINH-HHVSLLYALQSTTANSPKVFNDSPSSMAPLPHSLISHQHPN-IQSAPPKSYGKV-SERSTAHEETGDLKQESQLNFQAWRLGVETNTLRSWTVVPPECVEYVKSYMVGSGSQYVRDSYMVAKESMAYINSVKLSGDGKDAWVFDVDETLLSSLPFFAGHQYGGEGMDDDAF-IKWADLAEAPPLPASRSFYAHLLELGIKIFLLTGRYDYERNATEKNLGRAGYHSWEALLLRDPEDYEKSAMIYKSERRLKIEQDGFRIVGNSGDQWSDLTGYAVGDRTFKLPNPLYYV

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
55		33		66	0.997452
109		33	66		1.0
251	66		33		1.0
278	42		57		1.0
302	71		28		1.0
303		71	28		1.0
358	33	66			1.0
437		60	40		1.0
438	80		20		0.995493
806		83		16	0.999991
827		41	58		1.0
854			75	25	1.0
903		10		90	0.90298
908		30		70	1.0
935		88		11	0.923564
953			90	10	0.90298
955	90	10			0.90298
960		10		90	0.90298
976			50	50	1.0
1256		66		33	0.997452
1280	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain