SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17453

Length: 1185 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17453

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Os07g0664400 protein n=2 Tax=Oryza sativa RepID=Q0D3V0_ORYSJ	-	-	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	45%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002325666.1	predicted protein, partial [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PSK1

Fln msg:

Fln protein: MRLQGRVAVITGGASGIGEATAKLFVENGAKVVIADLQDDHGNRLAQSLAPNACFSHCDVSKEADVSALLDLALEKHGRLDIVFSNAGIPGGLFSSMADVTVEDLERVISVNVRGAYLCAKHAARVMIATKTRGSVLMTSSMASVMAMPNGPSYTASKHAVLGIMKSAATDLAPHGIRVNCVSPAGVSTPMLIDAMKKSFPSFDKQCAEEMLETTMELKGVTLEAIDVANSALFLCSDDARYISGHNLVIDGAFTSCKAFSTANSMDFLPIKSLFDGFAAASSKKIQSEMDKPNGQ*

Protein Length: 298

Fln nts: GATCCATCGTTGCTCATTCCACAGGCAGCAGAGGCAGCAGATAAT_-_ATGAGGTTGCAGGGAAGGGTTGCTGTGATCACAGGAGGCGCCAGTGGAATCGGAGAGGCTACCGCCAAGCTGTTCGTGGAGAATGGAGCGAAAGTAGTGATTGCAGACCTTCAGGACGACCATGGAAACCGTCTTGCTCAATCCCTCGCTCCCAACGCCTGTTTTTCCCACTGCGATGTCTCGAAAGAGGCGGACGTTTCCGCCCTGCTGGACTTGGCGCTGGAGAAGCACGGTCGTCTCGACATAGTGTTCAGCAATGCCGGAATCCCGGGCGGGCTATTCTCGTCCATGGCAGACGTCACTGTCGAGGATTTGGAAAGGGTCATTTCAGTGAATGTGCGCGGGGCGTATCTGTGCGCGAAGCACGCGGCCCGGGTGATGATAGCCACCAAAACCAGAGGTTCAGTTCTCATGACGTCGAGCATGGCGTCCGTGATGGCGATGCCCAACGGGCCTTCTTACACGGCGTCGAAGCACGCGGTGTTGGGGATTATGAAGTCGGCGGCCACGGATCTTGCTCCGCACGGCATCCGGGTGAACTGCGTTTCACCCGCAGGCGTGTCGACGCCCATGTTGATCGATGCCATGAAGAAGAGCTTCCCGTCCTTCGACAAACAATGCGCGGAAGAGATGCTGGAGACAACGATGGAGCTGAAGGGTGTCACTCTGGAAGCCATTGATGTTGCCAACTCTGCCCTCTTTCTGTGCAGCGACGACGCCCGTTACATCAGCGGCCATAATCTTGTAATCGATGGGGCATTCACGTCTTGCAAAGCCTTCTCCACTGCAAATTCCATGGATTTTCTTCCCATCAAGTCCTTATTCGATGGGTTCGCAGCAGCGAGTTCGAAGAAAATCCAGAGCGAAATGGATAAACCCAATGGTCAGTAG___CTTTGAGGCAGCCTCTATTTGCTTTTCACCATTTTCTCTTCACAGTTTCTATTATTTTGACCATAAAATCCTGAAAACATTGAGCGTGTAAAAGCATGACATGATGGAAGGAATCTATTTGTAATGGATCAGATCGATCAGCAGACATCACTAGAAACATGCATTCCTATGTAAGTGTGACCATTTTAAAATACACTAAATCTGCAGAGTTTCCATGATAATTTTAAGGGAAGAGGTTTAATAATTTTG

Fln Alignment:

Contig17453___MRLQGRVAVITGGASGIGEATAKLFVENGAKVVIADLQDDHGNRLAQSLAPNACFSHCDVSKEADVSALLDLALEKHGRLDIVFSNAGIPGGLFSSMADVTVEDLERVISVNVRGAYLCAKHAARVMIATKTRGSVLMTSSMASVMAMPNGPSYTASKHAVLGIMKSAATDLAPHGIRVNCVSPAGVSTPMLIDAMKKSFPSFDKQCAEEMLETTMELKGVTLEAIDVANSALFLCSDDARYISGHNLVIDGAFTSCKAFSTANSMDFLPIKSLFDGFAAASSKKIQSEMDKPNGQ
C0PSK1_______________MRLKGKVAVITGGASGIGEASAKLFVENGAQVVIADIQDDHGNRLAQSLAPNACFFHCDVSKETDVSALVDYALEKHGRLDIVFSNAGIPGGLFSSMADVTLEDLERVISVNVRGAYLCTKHAARVMIGAKTRGSILLTSSMASVMAMPNGPSYTASKHAVLGIMKSAATDLAPHGIRVNCVSPAGVSTPMLIDAMKKSFPSFDKHCADEMLETTMELKGLTLEADDVAKSALFLCSDDARYISGHNLVIDGAFTSCKAFSTANSMDFLPIKSFFDRLAPASSKKIQSEM---NGQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
687	10		90		0.90298
735		11	88		0.923564
753		12		87	0.992554
756		87		12	0.992554
902		10		90	0.90298
974		85	14		0.993533
995			85	14	0.993533
1113			85	14	1.0
1150		66		33	1.0
1158		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain