SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17448

Length: 1036 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17448

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS-LRR disease resistance protein homologue n=2 Tax=Hordeum vulgare RepID=Q84KC6_HORVU	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%

Source	Gene names
Sma3	At1g69550; At3g04220; At5g11250; F10D13_24; Os01g0260500; OsI_01261; OsJ_01178; P0699D11.16; POPTRDRAFT_585925; T6K12.16; rga S-9201;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G04220.1	Disease resistance protein (TIR-NBS-LRR class) family chr3:1109118-1112188 REVERSE LENGTH=867	2.0e-32	49%
RefSeq	Arabidopsis thaliana	NP_187072.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	3.0e-32	49%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA61

Fln msg: warning!, putative chimeric sequence! or repetitive structure and possible frame ERROR between 539 and 557, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 298 - 524

Fln protein: GKLRNLHSLALNGCQKLERLPDSFGSLTxxxxxxxxxxCEKLERLPDSFGSLTNLHSLDLSCCTKLVTLPYSFGSLTNLHSLDLSECTQLQRLPDSFGSLRNLHSLDLSERTHLERLPDSFGSLTNLHSLDLSECTRLERLPDFFRRLTNLRSLHLKDCFDLDRLPHSFRSFSFMGLDSxxxxxxxLERLPDSFGSFTNLHRLELSWCTQLESLPDSFGSLSSLEYLQVTSCEKLKSILDLAQLTKTARGSRVPSMGEMEGVERASQTADERVVERLRRQRFSEMEGVERGSQTAVG*

Protein Length: 299

Fln nts: GGTAAATTGAGGAACCTCCACAGCTTGGCCCTGAACGGGTGCCAGAAATTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAAxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGCGAGAAGTTGGAGAGGCTCCCAGATTCCTTTGGCAGCTTGACGAACCTCCACAGCTTGGACCTGTCTTGTTGCACTAAATTGGTGACGCTGCCATATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGTCTGAGTGCACTCAATTGCAGAGGCTGCCAGATTCCTTCGGCAGCTTGAGGAACCTCCACAGCTTGGACCTGTCTGAGCGCACTCACTTGGAGAGGCTGCCAGATTCCTTCGGCAGCTTGACGAACCTCCACAGCTTGGACCTGTCTGAGTGCACTCGATTGGAGAGGCTGCCAGATTTCTTCCGCAGACTGACGAATCTCCGCAGCTTGCACCTGAAGGATTGCTTTGACTTGGACAGGCTGCCACATTCCTTCCGCAGCTTCAGCTTCATGGGCCTCGACAGCTxxxxxxxxxxxxxxxxxxAATTAGAGAGGCTGCCAGATTCCTTCGGCAGCTTCACGAACCTCCACAGATTGGAGCTGAGTTGGTGCACTCAATTGGAGAGCCTGCCAGATTCTTTCGGGAGTTTAAGTAGCCTTGAATACTTGCAGGTAACATCTTGTGAGAAGTTGAAGAGCATACTAGATTTGGCGCAGCTAACAAAAACAGCTAGAGGTTCGCGGGTGCCCTCAATGGGCGAGATGGAGGGAGTCGAACGGGCGTCCCAAACTGCAGATGAGAGAGTAGTAGAGAGGCTGCGCCGGCAACGCTTTTCAGAGATGGAGGGAGTCGAACGGGGTTCCCAAACTGCAGTGGGATGAGAGAGTAGTAGAGAGGCTGCCAGAGACTAAAACATAAGCATGCATGACTGTAATACAAATGCTCTTTTCAGCGGTAAAGAAATGGGGTCCATGTGAGTGTAAAAGTATTATACAGTGAAGAAGCATTTTATATATATATATATT

Fln Alignment:

Contig17448___GKLRNLHSLALNGCQKLERLPDSFGSLTNxxxxxxxxxCEKLERLPDSFGSLTNLHSLDLSCCTKLVTLPYSFGSLTNLHSLDLSECTQLQRLPDSFGSLRNLHSLDLSERTHLERLPDSFGSLTNLHSLDLSECTRLERLPDFFRRLTNLRSLHLKDCFDLDRLPHS------FRSFSFMGLDSLxxxxxxLERLPDSFGSFTNLHRLELSWCTQLESLPDSFGSLSSLEYLQVTSCEKLKSILDLAQLTK--TARGSRVPSMGEMEGVERASQTADERVVE
D5AA61_______________GNLTNLQSMKLDHCRSLERLPESLGNLTNxxxxxxxxxCWRLERLPESLGNLMNLQSMMLHWCESLERLPESLGNLMNLQSMVLHECSKLESLPESLGNLTNLQSMVLHECDHLERLPESLGNLTNLQSMELIYCKRLARLPKSLGNLTNLQSMQLLGLKSLKRLPKSLGNLMNLRSMQLLGLESLxxxxxxLERLPKSLGNLTNLQSMELSFLESLERLP-SIKTLLSLEELRVLDCVKLKSIPDLAQLTKLRLLNVEGCHTLEELDGVEHCKSLVELNTIE

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
598		90		10	0.90298
719	88	11			0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
1021	1035	TA TA TA TA TA TA TA T	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain