SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17430

Length: 896 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17430

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Pollen allergen CJP38 n=1 Tax=Cryptomeria japonica RepID=Q588B8_CRYJA	-	-	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	76%
Sma3	Beta-1,3-glucanase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Glucan endo-1,3-beta-D-glucosidase.	EC:3.2.1.39	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Starch and sucrose metabolism	00500		0.0	%

Source	Gene names
Sma3	At2g01630; At3g07320; At3g07320/T1B9_1; At3g57240; At3g57270; BG2-1; BG2-2; BG2-3; BGL32; BGLUC; BHVG1; F21O3.3; F28O9.120; F28O9.90; GGL1; GGL4; GLUB1; GLUB2; GLUB3; GN1; GN2; GNS1; GSVIVT00002713001; GSVIVT00015734001; GSVIVT00016644001; GSVIVT000222200

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	proteinaceous extracellular matrix	GO:0005578	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	cellulase activity	GO:0008810	Molecular Function	-
Sma3	licheninase activity	GO:0042972	Molecular Function	-
Sma3	glucan endo-1,3-beta-D-glucosidase activity	GO:0042973	Molecular Function	-
Sma3	cation binding	GO:0043169	Molecular Function	-
Sma3	carbohydrate metabolic process	GO:0005975	Biological Process	-
Sma3	defense response	GO:0006952	Biological Process	-
Sma3	response to biotic stimulus	GO:0009607	Biological Process	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	plant-type hypersensitive response	GO:0009626	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Glycoside hydrolase, family 17	IPR000490	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	X8	IPR012946	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G16260.1	Glycosyl hydrolase superfamily protein chr4:9200180-9201441 REVERSE LENGTH=344	50%
RefSeq	Arabidopsis thaliana	NP_193361.4	catalytic/ cation binding / hydrolase [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002336706.1	predicted protein, partial [Populus trichocarpa]	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTI6

Fln msg: your sequence is shorter than subject: 252 - 344

Fln protein: LEPTRNGWVNDNIRPFYPATNIKYIAVGNEVLSGTQYVSYLVPAMRNIQTAIQNANLQNNIKVSTTHASDVSNGFPPSQGVFNDQVKGTMNSLLQFLSNHGSPFMANIYPYFSYTGNRASISLNYALFQSTSTVVQDGGRSYNNLFDALVDTHISAMQTLGYPNIPLIVTESGWPSGGADVATVANAQAYNNNLIRHVLSNAGTPKRPGTSIETYIFALFNENQKTGPETERHFGLFHPNQQPVYSVNIPP*

Protein Length: 253

Fln nts: TCCTCGAGCCAACGCGCAACGGTTGGGTTAACGATAACATTCGCCCCTTCTATCCTGCCACCAATATCAAGTACATTGCAGTGGGCAACGAGGTTTTGTCAGGCACGCAGTACGTATCGTATCTTGTTCCTGCCATGAGGAACATTCAAACTGCGATTCAGAACGCCAATCTGCAGAATAACATCAAGGTCTCTACCACTCACGCCTCCGACGTTAGTAACGGCTTCCCGCCGTCTCAGGGTGTCTTCAATGACCAGGTAAAAGGCACTATGAACTCTCTACTTCAATTCCTGTCAAATCACGGGTCTCCCTTCATGGCGAACATCTACCCATACTTCAGCTACACCGGCAACAGGGCCTCGATTTCTCTGAACTATGCTCTGTTTCAGTCCACGAGTACAGTGGTGCAAGACGGGGGCCGGAGCTACAACAACCTGTTCGATGCCTTGGTGGATACTCATATTTCGGCCATGCAAACCTTGGGATACCCCAACATCCCACTCATTGTTACTGAAAGCGGATGGCCTTCTGGTGGCGCGGATGTGGCCACAGTTGCGAATGCTCAGGCTTACAACAACAATCTCATCCGCCATGTATTATCAAATGCAGGGACACCCAAGAGGCCCGGAACTAGCATTGAGACCTATATCTTCGCTCTTTTCAACGAAAACCAAAAGACGGGGCCTGAGACGGAGCGTCACTTTGGGCTTTTCCACCCTAATCAACAGCCTGTATACTCTGTTAACATTCCTCCATAA___TTGTGTTGCAGGTGAGTCCAACGCACGAATAAAACTGTTGTGGACAGGTCCTTCTCGATATGCAACTGTCTTGATGCATATGTGATTCAGTATGCTATATGTATTGTGAATCCCCCTGCAATAAAGTGCAGACAATAA

Fln Alignment:

Contig17430___EPTRNGWVNDNIRPFYPATNIKYIAVGNEVLSGTQYVSYLVPAMRNIQTAIQNANLQNNIKVSTTHASDVSNGFPPSQGVFNDQVKGTMNSLLQFLSNHGSPFMANIYPYFSYTGNRASISLNYALFQSTSTVVQDGGRSYNNLFDALVDTHISAMQTLGYPNIPLIVTESGWPSGGADVATVANAQAYNNNLIRHVLSNAGTPKRPGTSIETYIFALFNENQKTGPETERHFGLFHPNQQPVYSVNIPP
A9NTI6_______________QDSANGWVNNNIVPFYPATNIKYIAVGNEVLPSTQYVSYLFPAMTNIQTAVQNANLQNNIKVSTTHVMGVTNGFPPSQGVFGDDVKDTMNSILKFLSDNGAPYMANVYPYFSYTGSGGSITLDYALFKSTSTVVTDNGRSYTNLFDAMVDTVISAMENLGYPNVPIVITESGWPSAGADAATVENAQSYNNNLIQHILSNAGTPKRSGTSIETYIFALFNENTKTGDEIERHFGLFNADQSPAYSVNFSP

SNPs (tot: 3)

Position	A %	G %	Probability
477	25	75	1.0
492	75	25	1.0
795	33	66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain