SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17426

Length: 1223 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17426

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Short chain alcohol dehydrogenase, putative n=1 Tax=Ricinus communis RepID=B9T6C0_RICCO	-	-	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	78%
Sma3	Tasselseed2-like short-chain dehydrogenase/reductase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.1.1.10-	-	2.052e-10	-
Sma3	3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase.	EC:1.1.1.53	-	1.642e-27	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Steroid hormone biosynthesis	00140		1.642e-27	%
Sma3	Metabolic pathways	01100		1.642e-27	%

Source	Gene names
Sma3	3bhsd; ABA2; ADH; AT4g03140; At1g52340; At2g47130; At2g47140; At3g26760; At3g26770; At3g51680; CTA; CTS2; F19K6.3; F4C21.6; GIN1; GSVIVT00005501001; GSVIVT00021537001; GSVIVT00021538001; GSVIVT00021540001; GSVIVT00021542001; GSVIVT00021544001; GSVIVT00021

Source	GOs	Term	Type	Identity
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	copper ion binding	GO:0005507	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	xanthoxin dehydrogenase activity	GO:0010301	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	transferase activity	GO:0016740	Molecular Function	-
Sma3	testosterone dehydrogenase [NAD(P)] activity	GO:0030283	Molecular Function	-
Sma3	proline biosynthetic process	GO:0006561	Biological Process	-
Sma3	immune response	GO:0006955	Biological Process	-
Sma3	multicellular organismal development	GO:0007275	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	regulation of abscisic acid biosynthetic process	GO:0010115	Biological Process	-
Sma3	sugar mediated signaling pathway	GO:0010182	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	2-5-oligoadenylate synthetase, N-terminal	IPR006116	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51680.1	NAD(P)-binding Rossmann-fold superfamily protein chr3:19173622-19174667 REVERSE LENGTH=303	57%
RefSeq	Arabidopsis thaliana	NP_190736.1	Rossmann-fold NAD(P)-binding domain-containing protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002323034.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUM5

Fln msg:

Fln protein: MESNGQANPSVASVRNLSNNGERRLEGKVAIVTGGAAGIGEAIVQLFAKHGAKVIIADVAEKAGRKLAESLSPAATTYVHCDVSKEEDVSAAVDLAMDKYGQLDIMYNNAGTNDSFLVKSVAEYDMEQFDRVMNVNVKGVMHGIKHAARVMIPRKKGCIISTTSVAGILGGAAPYSYTASKHAILGLTKNGAAELGKYGIRLNTVSPYGVATALAVQYFKQGDASSISEKDKAAMEGFCDSIANLQGHTLKAEDIAEAGLYLAGDESKYVSGHNLVVDGGFTVVNHSWGLYR*

Protein Length: 294

Fln nts: CGTCGTGACCTTGGCTGTCACTCATCCATCCAGCTTCTTCTATAACTTGTCCCTGCTTTATTTTGCAGCATCAGGAGGCAGCAGCTACGGACTAATCGATCAATTTCAATTTCGCTGCCCAATCGAACC_-_ATGGAGTCTAACGGACAGGCTAATCCATCTGTTGCTTCTGTTCGTAATCTCAGCAACAATGGAGAGCGACGATTGGAAGGGAAAGTTGCAATAGTAACGGGCGGGGCAGCGGGCATAGGAGAAGCCATTGTTCAGCTGTTCGCAAAGCACGGAGCGAAAGTCATAATCGCAGACGTTGCAGAGAAAGCTGGCAGAAAGCTTGCTGAATCCCTTTCTCCAGCTGCGACAACTTATGTGCACTGTGATGTCAGCAAAGAAGAAGACGTGAGCGCGGCTGTGGATCTGGCTATGGATAAGTATGGTCAACTGGACATTATGTACAACAACGCTGGAACTAACGACAGCTTTTTGGTGAAAAGCGTAGCAGAGTATGATATGGAGCAATTCGATCGAGTGATGAACGTAAACGTGAAAGGAGTGATGCACGGCATTAAGCACGCCGCCCGCGTGATGATCCCGCGGAAGAAGGGGTGCATCATCTCTACAACCAGCGTGGCGGGTATTCTGGGAGGAGCTGCTCCTTACTCCTACACAGCCTCCAAGCACGCAATCCTTGGATTGACTAAAAACGGCGCGGCCGAGCTTGGGAAATACGGGATCAGATTGAACACTGTTTCCCCTTATGGCGTGGCCACGGCTCTTGCAGTCCAGTACTTCAAACAAGGGGACGCCTCGTCAATTTCTGAAAAGGATAAGGCTGCCATGGAGGGCTTCTGCGACAGTATTGCAAATTTACAAGGACACACTCTTAAAGCAGAGGATATTGCGGAGGCGGGTCTGTACCTGGCCGGCGATGAGTCAAAATATGTTAGTGGGCATAACCTTGTCGTTGACGGCGGGTTCACTGTTGTGAATCACTCGTGGGGACTCTACCGATGA___TGTCTGTACAAGTCGAATAGAGAGTTTCCTGCTCATGTGTGAAAACCTTTCAAACTGTAGTTTTCGTGGAACTATTTTTCTACTGATGATGTCTGTATAAGTATAGCAGAGAGCTTAATGCTCATGTGTGTAGGCCTTTCAAAATCTAATTTTCTTCGAACTGTTTTTCCGTTATTTCAACCTCTGTCTCCTTGGGATAATATATTACTGTTTAG

Fln Alignment:

Contig17426___SNGQANPSVASVRNLSNNG-ERRLEGKXXXXXXXXXXXXXXXXQLFAKHGAKVIIADVAEKAGRKLAESLSPAATTYVHCDVSKEEDVSAAVDLAMDKYGQLDIMYNNAGTNDSFLVKSVAEYDMEQFDRVMNVNVKGVMHGIKHAARVMIPRKKGCIISTTSVAGILGGAAPYSYTASKHAILGLTKNGAAELGKYGIRLNTVSPYGVATALAVQYFKQGDASSISEKDKAAMEGFCDSIANLQGHTLKAEDIAEAGLYLAGDESKYVSGHNLVVDGGFTVVNHSWGLYR
A9NUM5_______________SNEEFNAAASSVGNLSFNGSERRLKGKVAIITGGASGIGEAIVRLFTKHGAKVILADIADEAGRNLAGSLSPPAT-YVHCDVSKEQDVRAAVDLAMEKHGQLDIMYNNAGTIEFVAVESVAEYEMEQFDRVMSVNVRGAMLGIKHAARVMIPRKKGCIISTASVAGILGGLTPYAYTASKHAILGLTKNGAAELGKYGIRVNTVSPSGVATALLVNYNKQGNGSVVSEEDKAAVEAYCTSIGNLEGATLRAEDIAEAGLYLASDEAKYVSGHNLVVDGGFSVVNHSWKLYR

SNPs (tot: 16)

Position	A %	C %	G %	T %	Probability
288	75			25	0.996473
290			25	75	0.996473
291		75	25		0.996473
474		85	14		0.993533
475			20	80	0.995493
694	25		75		0.996473
829	66			33	1.0
879	83		16		0.994512
977		88		11	0.923564
992	11	88			0.923564
993	11			88	0.923564
995			88	11	0.923564
996	11			88	0.923564
997	11		88		0.923564
998	11		88		0.923564
999		11	88		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain