SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17416

Length: 1263 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene17416

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	dehydrogenase/reductase SDR family member 4 [Arabidopsis thaliana] gb\|AAD48959.1\|AF147263_1 contains similarity to Pfam families PF00106 (short chain dehydrogenase; score=151.7, E=1.3e-41, N=1) and PF00678 (Short chain dehydrogenase/reductase C-terminus;	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Glucose/ribitol dehydrogenase	IPR002347	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G05530.1	IBR1, SDRA indole-3-butyric acid response 1 chr4:2816462-2818074 FORWARD LENGTH=254	68%
RefSeq	Arabidopsis thaliana	NP_567300.1	dehydrogenase/reductase SDR family member 4 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002316593.1	predicted protein [Populus trichocarpa]	70%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NNV2

Fln msg:

Fln protein: MEGTGQRFKGKVAVVTASTQGIGFAIAEHLGLEGASVVVSSRKKNNVEEAVEKLRAKGIDVLGVACHVSSREQRRDLIQKTVDKYGRIDILVSNAAANPTVEPIVLVPEPVLDKLWEINVKATILLVQDAAAHLSQESSIIIISSVAAYRPEASMAMYGVTKTALLGLTKALAAEMAPKTRVNTVAPGFVPTHFADFLLRNEDIKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVSGGMPSRL*

Protein Length: 255

Fln nts: TGTGTGAGTGTTGTTGAATTGCAGTAGGTGATATTTATTATTACTAGGAGTACCAAAAATGGGGAACAAGAATCGGAGTAGGTGGTACTTATTACTACCAGGAGTATTCAATAGCAGCATAACTGAGAGCAAGGGGAAAGTAGG_-_ATGGAAGGCACGGGTCAGAGATTCAAAGGGAAGGTGGCGGTGGTGACCGCTTCAACACAGGGCATAGGTTTCGCCATTGCAGAGCACCTTGGCCTCGAAGGTGCTTCCGTTGTCGTCTCTTCACGCAAAAAGAACAATGTAGAGGAAGCAGTGGAAAAGCTGAGAGCCAAAGGGATTGATGTTCTGGGAGTGGCCTGCCATGTTTCCAGTCGAGAACAGAGGAGGGATCTCATCCAAAAGACTGTAGATAAATATGGTCGCATAGACATTCTGGTCTCAAATGCAGCTGCTAATCCAACTGTGGAGCCCATTGTTTTGGTTCCAGAGCCTGTACTTGATAAACTTTGGGAGATTAATGTCAAGGCCACTATTCTTCTTGTCCAGGATGCTGCTGCTCACTTGTCACAAGAGTCATCGATTATCATAATTTCATCAGTTGCTGCTTACAGACCAGAGGCATCAATGGCGATGTATGGGGTTACCAAGACTGCTCTTTTAGGGCTCACAAAGGCTCTTGCTGCTGAAATGGCACCAAAAACAAGGGTTAACACTGTAGCTCCTGGTTTTGTACCCACACATTTTGCTGATTTCCTTCTTAGGAATGAGGATATTAAGAATAGTATTGAAGAGAGAACTTTACTTGGCAGGCTAGGGAAAACAACCGATATGGCTTCAGCCGTTGCCTTTCTAGCATCCAGTGATGCTTCATATATAACTGGAGAAACACTGGTGGTATCTGGCGGAATGCCATCAAGGCTCTAG___ATTGGCCCATGGGGTTTTTGGATCTATAGTATGTTCATGTCCCTTTGCATTCCATTCAACTTATTTTGCTCAGTTTTTCCTTATTGATTTTCAGAGAATTTAATCTTGAAATTATTGGGAAACGTCAACCTTCCTGAAATCATTGGACGAATTGAACATTACATATGACAGTTCTAAAATTCGACATTCATTGCTAGCATTTCCAATAAATGCTGTTCCACATTGCTACTTGTTGAGCGAGCTTGATTCATGATGCACAATGCAACAATTCAAATTATTATCCCAACTTTGGTATCAAATATTGATATTCAATAAGCAGTGACAATCATGATGTTTGAATTCCCATGCCTGCTATCT

Fln Alignment:

Contig17416___MEGTGQRFKGKVAVVTASTQGIGFAIAEHLGLEGAXXXXXXRKKNNVEEAVEKLRAKGIDVLGVACHVSSREQRRDLIQKTVDKYGRIDILVSNAAANXXXXXXXXXXXXXXDKLWEINVKATILLVQDAAAHLSQEXXXXXXXXVAAYRPEASMAMYGVXXXXXXXXXXXXXXEMAPKTRVNTVAPGFVPTHFADFLLRNEDIKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVSGGMPSRL
A9NNV2_______________MEGTGRRFQGKVAVVTASTQGIGFAIAERLGLEGASVVVSSRRQKNVEEAVEKLRAKGIDVLGVACHVSSREQRRDLIQKTVNKYGGIDILVSNAAANPTVNPIVEVPEPVLDKLWEVNVKATILLVQDAAAHLSQESSIIIISSIAAYSPEASMAMYGVTKTALLGLTKALAAEMAPNTRVNTVAPGFVPTHFADFLVRNEDVKNSIEERTLLGRLGKTTDMASAVAFLASSDASYITGETLVVAGGLPSRL

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
806	91		2		0.993509
1067		13		86	0.999973
1068	13			86	0.999973
1090		92		7	0.999999
1230	90		10		0.90298
1249	25			75	0.996473
1250	25	50			0.995533
1251	25	75			0.996473
1252	25	75			0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain