SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene17408

Length: 826 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene17408 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Peptidyl-prolyl cis-trans isomerase n=3 Tax=Pinaceae RepID=A5HIY2_PINTA	-	-	0.0	91%
FL-Next	sp=Peptidyl-prolyl cis-trans isomerase; Pinus taeda (Loblolly pine).	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Sma3	Peptidylprolyl isomerase.	EC:5.2.1.8	-	0.0	-

Source	Gene names
Sma3	Cyp1;

Source	GOs	Term	Type	e value	Identity
Sma3	peptidyl-prolyl cis-trans isomerase activity	GO:0003755	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain	IPR002130	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16600.1	ROC3 rotamase CYP 3 chr2:7200862-7201383 FORWARD LENGTH=173	85%
RefSeq	Arabidopsis thaliana	NP_179251.1	Peptidyl-prolyl cis-trans isomerase CYP19-1 [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002301975.1	predicted protein [Populus trichocarpa]	86%

Full-Lengther Next Prediction

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
97		33		66	1.0
342		14		85	0.993533
370			85	14	0.993533
699	85		14		0.999981
757		80	20		1.0
779		11	88		0.923564
780	88	11			0.923564
787		25		75	0.996473
790	20	60			0.99255
791	50	25	25		1.0
792	50		25	25	0.995533
793	25			50	0.995533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain